BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51440.1 Length=1251 Score E Sequences producing significant alignments: (Bits) Value Ahg485496 jgi|Araly1|485496|fgenesh2_kg.5__1488__AT3G51440.1 1528 0.0 Ahg323700 jgi|Araly1|323700|fgenesh1_pm.C_scaffold_5001244 1188 0.0 Ahg485494 jgi|Araly1|485494|fgenesh2_kg.5__1486__AT3G51420.1 1129 0.0 > Ahg485496 jgi|Araly1|485496|fgenesh2_kg.5__1488__AT3G51440.1 Length=1119 Score = 1528 bits (827), Expect = 0.0 Identities = 970/1036 (94%), Gaps = 22/1036 (2%) Strand=Plus/Plus Query 195 ATTTCTCACCGGAGCTGAGTTTATCGGAGTCGGTCTTCTCAATAGCCCCGAAGACATCGC 254 ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| ||||| Sbjct 101 ATTTCTCGCCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAACCCCGAAGATATCGC 160 Query 255 CTACCATGAAGACTCTGGTTTCATCTACACTGGTTGCGTTGATGGATGGGTCAAACGAGT 314 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 161 TTACCATGAAGACTCTGGTTTCATCTATACTGGTTGCGTTGATGGATGGGTGAAACGAGT 220 Query 315 CAAGGTCGCCGAGTCGGTTAATGACTCACTCGTTGAAGATTTGGTCAACACCGGTGGTAG 374 |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| Sbjct 221 CAAGGTCGCCGAGTCGGTTAATGACTCAGTCGTTGAAGATTGGGTCAATACCGGTGGTAG 280 Query 375 ACCGCTCGGAATCGC-TTTCGGAATCCACGGCGAAGTCATCGTCGCTGACGCTTACAAGG 433 ||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||| Sbjct 281 ACCGCTCGGAATCGCGTTT-GGACTCCACGGCGAAGTCATCGTCGCTGACGCGTACAAGG 339 Query 434 GACTGTTGAATATAAGCGGTGACGGGAAGAAGACGGAATTGTTAACGGAAGAAGCGGACG 493 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 340 GACTGTTGAATATAAGCGGTGACGGGAAGAAGACGGAATTATTAACGGAAGAAGCGGACG 399 Query 494 GCGTTAGATTTAAGCT-ACCGGATGCAGTTACTGTTGCAGATAACGGCGTTTTGTATTTC 552 |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 400 GCGTTAGATTTAAGCTGA-CGGATGCAGTTACTGTCGCAGATAACGGCGTTTTGTATTTC 458 Query 553 ACTGATGGTTCTTATAAGTACAATCTCCATCAGTTTAGTTTTGATATCTTGGAAGGCAAA 612 ||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||| Sbjct 459 ACTGATGCTTCTTATAAATACAGTCTCCATGAGTTTAGTTTTGATATCTTGGAAGGCAAA 518 Query 613 CCACACGGTCGTCTCATGAGCTTTGATCCCACCACAAAAGTGACACGTGTACTTCTCAGA 672 ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 519 CCACATGGTCGTCTCATGAGCTTTGATCCCACTACAAAAGTGACACGTGTCCTTCTCAGA 578 Query 673 GATCTCTACTTTGCTAATGGTGTCTCTCTGTCTCCTGATCAAACCCATCTCGTCTTCTGC 732 || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 579 GACCTCTACTTCGCTAATGGTGTCTCTATGTCTCCTGATCAAACCCATCTCGTCTTCTGT 638 Query 733 GAAACCCCCATAAGAAGATGTAGTAAGTATTACATCAATGGAGGGCGCGTGGAGTTATTT 792 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 639 GAAACCCCTATAAGAAGATGTAGTAAGTATTACATCAATGGAGGGCGTGTGGAGTTATTT 698 Query 793 ATTCAAGGCTTACCAGGCTATCCAGATAACATCCGGTATGATGGAGATGGACATTACTGG 852 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 699 ATTCAAGGCTTACCAGGCTATCCAGATAACATTCGGTACGATGGAGATGGACATTACTGG 758 Query 853 ATTGCAATGCCTTCGGGAGTAACAACGTTGTGGAAGCTTTCAATGAAATACCCATTCTTG 912 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 759 ATTGCAATGCCTTCGGGAGTAACAACGTTGTGGAAGCTTTCGATGAAATACCCTTTCTTG 818 Query 913 AGGAAAATCACAGCTATGGCGGCTAAGTACGGCTATGAACCTATGTTTATGGAGAATGCA 972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 819 AGGAAAATCACAGCTATGGCGGCTAAGTACGGCTATGAACCTATGTTTATGGAGAATGCA 878 Query 973 GGAGTTTTGCAGGTGGATTTGGATGGGAACCCCATCGCATACTACCATGATCAGGCGCTC 1032 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 879 GGAGTTTTGCAAGTGGATTTGGATGGGAACCCCATCGCATACTACCATGATCAGGCACTC 938 Query 1033 TCTCACATAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAAGTCTCTGGCAT 1092 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 939 TCTCACATAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAAGTCTCTTGCAT 998 Query 1093 TCACACATTCTCCGACTTGATCTCCTAAAATACCCTGCACAA---AACAAGAAGCTTTGA 1149 ||||||||| |||||||||||||| | |||||||||||| | ||||||||||||||| Sbjct 999 TCACACATTATCCGACTTGATCTCATGAAATACCCTGCAGTACTGAACAAGAAGCTTTGA 1058 Query 1150 AACTTCATGTTTATaaaaaaaaaaGACTTTTACATTTTAGGAGTATTCACTGTCACAAAA 1209 ||| ||| |||| | ||| ||||||| |||||||||| |||||||||| Sbjct 1059 AACATCAAGTTT------------G--TTT-ACATTTTGGGAGTATTCATTGTCACAAAA 1103 Query 1210 TGTAAACTCATTGTCC 1225 ||||||||||| |||| Sbjct 1104 TGTAAACTCATCGTCC 1119 > Ahg323700 jgi|Araly1|323700|fgenesh1_pm.C_scaffold_5001244 Length=1119 Score = 1188 bits (643), Expect = 0.0 Identities = 975/1133 (86%), Gaps = 31/1133 (3%) Strand=Plus/Plus Query 34 ATGCCTGTATTCCTCTCTTCTCGTTTTCTCTTCTTCTGCATCATCGTCCCCTTACTCATC 93 |||||||||||| |||||||||||||||||||||||| || |||||||||||||||| || Sbjct 1 ATGCCTGTATTCTTCTCTTCTCGTTTTCTCTTCTTCTCCACCATCGTCCCCTTACTCGTC 60 Query 94 TCTATCACTCTCTACCAACTCGACACGTTTGACCCAGCT-C--ATCATCCCGCTGAC-TC 149 |||||| |||||||| |||||||||| |||||||||||| | || | ||| || | | Sbjct 61 TCTATCGCTCTCTACAAACTCGACACCTTTGACCCAGCTCCGGTTCCTTCCGATG-CAT- 118 Query 150 ACTCATCTCCTCTACTGCTTCAATCCCGCCTCTAATAAACGA-AAGATTTCTCACCGGAG 208 || | |||||||| | |||| |||||||| || | ||||| || || |||||||||| Sbjct 119 ACGC--CTCCTCTAATACTTCCATCCCGCCGCTTGTCAACGACAA-ATCACTCACCGGAG 175 Query 209 CTGAGTTTATCGGAGTCGGTCTTCTCAATAGCCCCGAAGACATCGCCTACCATGAAGACT 268 ||||||||||||| |||||||||||| ||| || || || |||||||||||| |||| | Sbjct 176 CTGAGTTTATCGGCGTCGGTCTTCTCGATAAACCTGAGGATATCGCCTACCATCAAGAGT 235 Query 269 CTGGTTTCATCTACACTGGTTGCGTTGATGGATGGGTCAAACGAGTCAAG-GTCGC-CGA 326 || | ||||||| ||||| ||| | ||||||||||| ||||||||| || ||| | || Sbjct 236 CTAATCTCATCTATACTGGCTGCATAGATGGATGGGTGAAACGAGTC-AGTGTC-CATGA 293 Query 327 GTCGGTTAATGACTCACTCGTTGAAGATTTGGTCAACACCGGTGGTAGACCGCTCGGAAT 386 || | |||||||||| ||||||| |||| |||||| ||||| |||||||| |||||||| Sbjct 294 CTCAGCTAATGACTCAGTCGTTGAGGATTGGGTCAATACCGGCGGTAGACCTCTCGGAAT 353 Query 387 CGCTTTCGGAATCCACGGCGAAGTCATCGTCGCTGACGCTTACAAGGGACTGTTGAATAT 446 ||| |||||||| |||||||||||||| || || ||||| ||||||||||||||||| || Sbjct 354 CGCCTTCGGAATTCACGGCGAAGTCATTGTTGCAGACGCATACAAGGGACTGTTGAACAT 413 Query 447 AAGCGGTGACGGGAAGAAGACGGAATTGTTAACGGAAGAAGCGGACGGCGTTAGATTTAA 506 ||| ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| Sbjct 414 AAGTGGTGACGGGAAGAAGACGGAATTATTGACGGATGAAGCGGAAGGCGTTAGATTTAA 473 Query 507 GCT-ACCGGATGCAGTTACTGTTGCAGATAACGGCGTTTTGTATTTCACTGATGGTTCTT 565 ||| | | |||| ||| | |||||||||||||||||||||||||||||||||| ||||| Sbjct 474 GCTGA-CTGATGTAGTCGCCGTTGCAGATAACGGCGTTTTGTATTTCACTGATGCTTCTT 532 Query 566 ATAAGTACAATCTCCATC-AGTTTAGTTTTGATATCTTGGAAGGCAAACCACACGGTCGT 624 |||| |||| ||| |||| || | | ||||| || |||||||| ||||||||||||||| Sbjct 533 ATAAATACACTCTACATCAAG-TCAAATTTGACATTTTGGAAGGTAAACCACACGGTCGT 591 Query 625 CTCATGAGCTTTGATCCCACCACAAAAGTGACACGTGTACTTCTCAGAGATCTCTACTTT 684 ||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||| Sbjct 592 CTCATGAGCTTTGATCCCACCACTAAAGTGACACGTGTTCTCCTCAGAGATCTTTACTTC 651 Query 685 GCTAATGGTGTCTCTC-TGTCTCCTGATCAAACCCATCTCGTCTTCTGCGAAACCCCCAT 743 |||||||| ||||| | ||||||||||||||||||||||| ||||||| ||||| ||||| Sbjct 652 GCTAATGGCGTCTC-CATGTCTCCTGATCAAACCCATCTCATCTTCTGTGAAACTCCCAT 710 Query 744 AAGAAGATGTAGTAAGTATTACATCAATGGAGG-GCGCGTGGAGTTATTTATTCAAGGCT 802 |||||||| || ||||||||||||| | |||| ||| || ||| |||| |||||||||| Sbjct 711 GAGAAGATGCAGCAAGTATTACATCAGT-GAGGAGCGTGTAGAGGTATTCATTCAAGGCT 769 Query 803 TACCAGGCTATCCAGATAACATCCGGTATGATGGAGATGGACATTACTGGATTGCAATGC 862 ||||||| ||||||||||| || ||||| || |||||||||||||||||||| || ||| Sbjct 770 TACCAGGTTATCCAGATAATATTCGGTACGACGGAGATGGACATTACTGGATCGCTATGG 829 Query 863 CTTCGGGAGTAACAACGTTGTGGAAGCTTTCAATGAAATACCCATTCTTGAGGAAAATCA 922 |||||||||||||| ||||||| ||| || ||||||||||| |||||||||||| ||| Sbjct 830 TTTCGGGAGTAACAAATTTGTGGAGGCTATCGATGAAATACCCTTTCTTGAGGAAACTCA 889 Query 923 CA-GCTATGGCGGCTAAGTACGGCTAT-GAACCTATGTTTATGGAGAATGCAGGAGTTTT 980 || || |||||||||||||| ||| | |||| |||||||||| |||||||||| ||||| Sbjct 890 CAGGC-ATGGCGGCTAAGTATGGC-GTGGAACTTATGTTTATGAAGAATGCAGGCGTTTT 947 Query 981 GCAGGTGGATTTGGATGGGAACCCCATCGCATACTACCATGATCAGGCG-CTCTCTCACA 1039 |||||| |||||||||||||| ||||||||||||||| ||||||| | | |||||||||| Sbjct 948 GCAGGTTGATTTGGATGGGAATCCCATCGCATACTACTATGATCA-GAGACTCTCTCACA 1006 Query 1040 TAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAAGTCTCTGGCATTCACACA 1099 |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| Sbjct 1007 TAACCACCGGTGTCAAGATTGGGAACTATCTCTATTGTGGAAATATCTTGCATTCACACA 1066 Query 1100 TTCTCCGACTTGATCTCCTAAAATACCCTGCACA-AA-AC-AAGAAGCTTTGA 1149 || ||||||| ||||| | ||||| |||||||| || | |||||||||||| Sbjct 1067 TTATCCGACTCGATCTTTTGAAATATCCTGCACAGAAGAAGAAGAAGCTTTGA 1119 > Ahg485494 jgi|Araly1|485494|fgenesh2_kg.5__1486__AT3G51420.1 Length=1145 Score = 1129 bits (611), Expect = 0.0 Identities = 979/1154 (85%), Gaps = 35/1154 (3%) Strand=Plus/Plus Query 6 ttttttCCACAGAA-CCAATCCTTCTACAATGCCTGTATTCCTCTCTTCTCGTTTTCTCT 64 ||||||||||| || |||||| |||||||||| || | ||| |||| ||||||| |||| Sbjct 1 TTTTTTCCACA-AACCCAATCTTTCTACAATGGCTATGTTCGTCTCCACTCGTTTGCTCT 59 Query 65 TCTTCTGCATCATCGTCCCCTTACTCATCTCTATCACTCTCTACCAAC---TCGACACGT 121 |||||| ||||||| |||| |||||||||||||||||||||||||||| ||||| | | Sbjct 60 TCTTCTCCATCATCATCCCTTTACTCATCTCTATCACTCTCTACCAACTGATCGACTCAT 119 Query 122 TTGACCCAGCT-CATCATCCCGCTGACTCACTCATCTCCTCTACTGCTTCAATCCCGCCT 180 | ||||||||| || | ||||||||||||||||||| ||||| || ||||||||||||| Sbjct 120 TCGACCCAGCTCCA-CTTCCCGCTGACTCACTCATCACCTCTCCTACTTCAATCCCGCCA 178 Query 181 CTAATAAACGA-AAGATTTCTCACCGGAGCTGAGTTTATCGGAGTCGGTCTTCTCAATAG 239 || | ||||| || ||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 179 CTTCTCAACGACAA-ATTCCTCACCGGAGCTGAGTTTATCGGCGTCGGTCTTCTCAATAA 237 Query 240 CCCCGAAGACATCGCCTACCATGAA-GACTCTGG-TTTCATCTACACTGGTTGCGTTGAT 297 ||||||||| ||||| |||||| || |||||||| || |||||||||||||| |||||| Sbjct 238 CCCCGAAGATATCGCTTACCAT-AAGGACTCTGGCCTT-ATCTACACTGGTTGTGTTGAT 295 Query 298 GGATGGGTCAAACGAGTCAAG-G-TCGCCGAGTCGGTTAATGACTCACTCGTTGAAGATT 355 |||||||| ||||||||| || | || ||| || | |||||||||| |||| || |||| Sbjct 296 GGATGGGTGAAACGAGTC-AGTGTTC-ACGACTCAGCTAATGACTCAGTCGTGGAGGATT 353 Query 356 TGGTCAACACCGGTGGTAGACCGCTCGGAATCGCTTTCGGAATCCACGGCGAAGTCATCG 415 |||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 354 GGGTCAATACCGGCGGTAGACCTCTCGGTATCGCTTTCGGAATCCACGGCGAAGTCATTG 413 Query 416 TCGCTGACGCTTACAAGGGACTGTTGAATATAAGCGGTGACGGGAAGAAGACGGAATTGT 475 |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 414 TCGCAGACGCGGACAAGGGACTGTTGAATATAAGCGGTGACGGGAAGAAGGCGGAACTGT 473 Query 476 TAACGGAAGAAGCGGACGGCGTTAGATTTAAGCT-ACCGGATGCAGTTACTGTTGCAGAT 534 | ||||| ||||| || ||||||||||| ||||| || |||||||||||| ||||||||| Sbjct 474 TGACGGATGAAGCAGAAGGCGTTAGATTGAAGCTGAC-GGATGCAGTTACCGTTGCAGAT 532 Query 535 AACGGCGTTTTGTATTTCACTGATGGTTCTTATAAGTACAATCTCCATCAGTTTAGT-TT 593 ||||||||||||||||||||||||| ||||||||| || || ||||||| |||| | || Sbjct 533 AACGGCGTTTTGTATTTCACTGATGCTTCTTATAAATATGATATCCATCAATTTA-TCTT 591 Query 594 TGATATCTTGGAAGGCAAACCACACGGTCGTCTCATGAGCTTTGATCCCACCACAAAAGT 653 |||| ||||||||||||||||||| || |||||||| |||||||||||||||||| || Sbjct 592 TGATTTCTTGGAAGGCAAACCACATGGACGTCTCATAAGCTTTGATCCCACCACACGTGT 651 Query 654 GACACGTGTACTTCTCAGAGATCTCTACTTTGCTAATGGTGTCTCTC-TGTCTCCTGATC 712 |||||||| |||||||| || || ||||| |||||||| | || | | || ||||||| Sbjct 652 CACACGTGTCCTTCTCAGCGACCTTTACTTCGCTAATGGCATATC-CATATCCCCTGATC 710 Query 713 AAACCCATCTCGTCTTCTGCGAAACCCCCATAAGAAGATGTAGTAAGTATTACATCAA-T 771 ||||||||||||||||||||||||| || |||||||||||||||||||| || || | Sbjct 711 AAACCCATCTCGTCTTCTGCGAAACGGTCAGGAGAAGATGTAGTAAGTATTATAT-AAGT 769 Query 772 GGAGG-GCGCGTGGAGTTATTTATTCAAGGCTTACCAGGCTATCCAGATAACATCCGGTA 830 | ||| ||| |||||| |||| ||||||||||| || || | |||||||||||| || || Sbjct 770 G-AGGAGCGTGTGGAGGTATTGATTCAAGGCTTGCCGGGTTTTCCAGATAACATTCGATA 828 Query 831 TGATGGAGATGGACATTACTGGATTGCAATGCCTTCGGGAGTAACAACGTTGTGGAAGCT 890 || ||||||||| |||||||||| || || ||||| |||||||||| ||||||||| Sbjct 829 CGACGGAGATGGATATTACTGGATCGCTTTGGTTTCGGAAGTAACAACGCCGTGGAAGCT 888 Query 891 TTCAATGAAATACCCATTCTTGAGGAAAATCACAGCTATGGCGGCTAAGTACGGCTATG- 949 || ||||||||||| |||||||||||| ||| | | || ||||||||||| ||| || Sbjct 889 CTCGATGAAATACCCTTTCTTGAGGAAACTCATATCAATAGCGGCTAAGTATGGCG-TGG 947 Query 950 AACCTAT-GTTTATGGAGAATGCAGGAGTTTTGCAGGTGGATTTGGATGGGAACCCCATC 1008 || ||| || |||| |||||||||| |||||||| |||||||||| ||||| |||||| Sbjct 948 AAT-TATTGTCTATGAAGAATGCAGGCGTTTTGCAATTGGATTTGGACGGGAATCCCATC 1006 Query 1009 GCATACTACCATGATCAGGCGCTCTCTCACATAACCACCGGTGTCAAGATTGGGAACTAT 1068 |||| ||||||||||| | ||||||||||||| | ||| ||||||||||||||| || Sbjct 1007 GCATTGTACCATGATCATCCATTCTCTCACATAACAAGCGGAGTCAAGATTGGGAACCAT 1066 Query 1069 CTCTATTGTGGAAGTCTCTGGCATTCAC-ACATT-CTCCGACTTGATCTCCTAAAATACC 1126 ||||||||||| ||||||| |||||| | ||||| || |||| |||||| | ||||| | Sbjct 1067 CTCTATTGTGGGAGTCTCTTGCATTC-CTACATTACTA-GACTCGATCTCTTGAAATATC 1124 Query 1127 CTGCACAAAACAAG 1140 |||||||||| ||| Sbjct 1125 CTGCACAAAAGAAG 1138 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46738696242 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5