BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51510.1
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938013 jgi|Araly1|938013|scaffold_502204.1 929 0.0
> Ahg938013 jgi|Araly1|938013|scaffold_502204.1
Length=595
Score = 929 bits (503), Expect = 0.0
Identities = 566/596 (95%), Gaps = 5/596 (1%)
Strand=Plus/Plus
Query 31 TGCTTTCATCTTCTTCTTAAGCATCTATGGCCGCGTCTCTAACATCTCTTCCGACCGGTT 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGCTTTCATCTTCTTCTTAAGCATCTATGGCCGCGTCTCTAACATCTCTTCCGACCGGTT 60
Query 91 TTTGTCTTAGCCATGGTGATGAATGTTGCAAC--C-GTTCACCTACCAAATCACCATTTC 147
| ||||| |||||||||||||| ||||| ||| | ||||||||||||||||||||||||
Sbjct 61 TCTGTCTGAGCCATGGTGATGAGTGTTGTAACAGCCGTTCACCTACCAAATCACCATTTC 120
Query 148 CAGGCCATCATCCTCTGGCTGGGAGGAGGAAGGGTCACTTGCTCCATTACGAACGTAGTA 207
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 121 CAGGCCACCATCCTCTGGCTGGGAGGAGGAAGGTTCACTTGCTGCATTACGAACGTAGTA 180
Query 208 CAGTGAGGAGATTGGTTGTGACGGCGGCGACGGAGGGATCTAAAAAATCTAAAGAAAGTG 267
|||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||
Sbjct 181 CAGTGAGGAGATTGGTCGTGACGGCGGCGACGGAGGGTTCTAGAAAATCTAAAGAAAGTG 240
Query 268 AACCGTCTTGGGCGAATCCTGACTCAGATGAGCCACCTCCTTGGGCTAGAAACGAAGGTC 327
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 AACCGTCTTGGGCGAACCCTGACTCAGATGAGCCACCTCCTTGGGCTAGAAATGAAGGTC 300
Query 328 GTTCTTCTACGTCCCAAGAGAGCTTTGAGGTTCCTTTCTTTGTTTATCTGCTAGCTTCCG 387
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || |
Sbjct 301 GTTCTTCTACGTCCCAAGAGAGCTTTGAGGTTCCCTTCTATGTTTATCTGCTAGCCTCTG 360
Query 388 CGATTACTGCCATTGCTGCTATTGGTTCTGTTTTCGAGTACACAAGCAAGAATCCAGTTT 447
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CGATTACTGCCATTGCTGCTATTGGTTCTGTTTTCGAGTACTCAAGCAAGAATCCAGTTT 420
Query 448 TCGGGATCTTGGAATCTGACAGCATCTTTTATACTCCTGTGCTTGGATTCTTTGCTCTTA 507
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGGGGTCTTGGATTCTGACAGCATCTTTTATACTCCTGTGCTTGGATTCTTTGCTCTTA 480
Query 508 CTGGAATCCCCACTTCTGTGTTCCTATGGTTCAAATCCGTTGAAGCTGCTAATAAGGAAG 567
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGGAATCCCTACTTCTGTATTTCTATGGTTCAAATCCGTTGAAGCTGCTAATAAGGAAG 540
Query 568 CTCAAGAACAAGATAAAAGAGATGGCTTTCTTTAAAA-TCCTTTTGTGTGATTCTG 622
|||| |||||||||||||||||||||||||||||||| || ||| ||||| |||||
Sbjct 541 CTCAGGAACAAGATAAAAGAGATGGCTTTCTTTAAAACTCATTT-GTGTGTTTCTG 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29964612762
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5