BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51600.1
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485512 jgi|Araly1|485512|fgenesh2_kg.5__1504__AT3G51600.1 900 0.0
> Ahg485512 jgi|Araly1|485512|fgenesh2_kg.5__1504__AT3G51600.1
Length=716
Score = 900 bits (487), Expect = 0.0
Identities = 649/721 (90%), Gaps = 36/721 (5%)
Strand=Plus/Plus
Query 1 ACCTTCTACTTTCATGCATTTGCACTCATAAGCTCTCTCTATAT-AAACCCAACCTTCAT 59
|||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||
Sbjct 1 ACCTTCTACTTTCATGCATTTGGGCTC-TTCGCTCTCTCTATATAAAACCCAACCTTCAT 59
Query 60 TACCATTCTTCATTATCCAATCCAATCCATTACTTACTAAGTAAAAAGAGaaaaaaaaaa 119
||||| || | || | || | ||||| | | | | |||||||| ||| |||||
Sbjct 60 TACCA---TT-A--AT-C-AT-C-ATCCA--A--T-C-CA--AAAAAGAG-AAACAAAAA 100
Query 120 aaTT-AAGATATGGAGGGACTCTTGAAGTTGTCAACTTTGGTGATTGTGTGCATGTTAGT 178
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 101 GTTTAAAGATATGGAGGGACTCTTGAAGTTGTCAACGTTGGTGATTGTGTGCATGTTAGT 160
Query 179 GACCGCTCCAATGGCGTCCGAGGCAGCAATCTCGTGCGGCGCAGTCACCGGCAGCTTAGG 238
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 161 GACCGCTCCAATGGCGTCCGAGGCAGCCATCTCATGCGGCGCAGTCACCGGCAGCTTGGG 220
Query 239 TCAATGCTATAACTACTTGACCCGAGGCGGTTTCATTCCTAGAGGGTGTTGCTCTGGCGT 298
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 221 TCAATGCTATAACTACTTGATCCGAGGCGGTTTCATTCCTCGAGGGTGTTGCTCTGGCGT 280
Query 299 TCAGAGGCTCAACAGCTTGGCTCGTACCACCCGTGACCGCCAACAAGCTTGTCGTTGTAT 358
|||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 281 TCAGAGGCTCCACAGCATGGCTCGTACCACCCGTGACCGACAACAAGCTTGTCGTTGTAT 340
Query 359 CCAGGGAGCAGCGAGAGCCTTGGGTTCTCGACTTAACGCTGGTCGTGCTGCTCGTCTCCC 418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CCAGGGAGCAGCTAGAGCCTTGGGTTCTCGACTTAACGCTGGTCGTGCTGCTCGTCTCCC 400
Query 419 TGGTGCTTGCCGTGTTAGGATCTCTTACCCCATCAGTGCCAGAACCAACTGTAACACCGT 478
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 401 CGGTGCTTGCCGTGTTAGGATCTCTTACCCCATCAGTGCCAGAACTAACTGTAACACCGT 460
Query 479 CAGGTGATCAAAAGAAGATAGACGTTGAAGGGTTTTCATATAATCGATGAGAGAGTATTA 538
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 461 GAGGTGATCAAGAGGTGATAGACGCTGAAGGGTTTTCATATAATCGATGAGAGAGTATTA 520
Query 539 AAA-ATAATTAAGATGTCACACTATATACACACTAGTGTATCCTTTT-ACTGTTATTATT 596
||| |||||||||||||||| |||||| | | || | |||||||| ||||||||| ||
Sbjct 521 AAATATAATTAAGATGTCAC--TATATA-AGAGTA-T--ATCCTTTTTACTGTTATTGTT 574
Query 597 GTTGTGTTTCTAGATTTTGTGTTTTCATGTCTTTCTTTGTATATGACG--G-TCCATTTA 653
| ||||||| |||| |||||||||||||| |||||||| ||||||||| | ||||||||
Sbjct 575 GCTGTGTTT-TAGAATTTGTGTTTTCATGCCTTTCTTTATATATGACGACGGTCCATTTA 633
Query 654 ATTGGTCGTCTGTGTTATGTACTCCTCTAATGATATATTGAATTTACGAT-TATGTATTA 712
|||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| || ||
Sbjct 634 ATTGGTCGTCTGTGTTGTGTACTCCTCTAATGATATATGGAATT-ACGATATATATAGTA 692
Query 713 T 713
|
Sbjct 693 T 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27715360659
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5