BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51660.1 Length=676 Score E Sequences producing significant alignments: (Bits) Value Ahg485520 jgi|Araly1|485520|fgenesh2_kg.5__1512__AT3G51660.1 819 0.0 > Ahg485520 jgi|Araly1|485520|fgenesh2_kg.5__1512__AT3G51660.1 Length=626 Score = 819 bits (443), Expect = 0.0 Identities = 568/622 (91%), Gaps = 34/622 (5%) Strand=Plus/Plus Query 63 GAGATCTTCTCTTCCACAACTTCCAAACACCATTTAAATCCCCTCTCATTTGGTTTCTTG 122 |||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||||| Sbjct 23 GAGATCTTCTCTTCCACAACTTCCAAACTCCATATAAAT--CCTCTCTTTTGGTTTCTTG 80 Query 123 AGATTCTT-GCAAACAAAGCTTAACGGGCGTTAGTATTCACGGTGAGAAAATGCCTTGTC 181 |||||||| || ||| |||||||| || | ||||||||||||||||||||| Sbjct 81 AGATTCTTGGC-AAC-AAGCTTAA----CG---G-----ACGGTGAGAAAATGCCTTGTC 126 Query 182 TTTACATTACAACAAACGTCAATTTTGACGGCGTTAACACCGATCCGTTCTACTCCGAAG 241 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 127 TTTACATTACAACCAACGTCAATTTTGACGGCGTTAACACCGATCCATTCTACTCGGAAG 186 Query 242 TCACCAAAGCCGTCGCTTCCATCGTCGGACGACCTCAAAACTTAGTGATGGTGGTGTTGA 301 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 187 TCACCAAAGCCGTCGCTTCCATCGTCGGACGACCTCAGAACTTAGTGATGGTGGTGTTGA 246 Query 302 AGGGATCAGTAGAGATAGTATTTGGAGGGAACAAAGAAGCAGCTGCATATGCAGAGATTG 361 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 247 AGGGATCAGTAGAGATAGTGTTTGGAGGGAACAAAGAAGCAGCTGCATATGCAGAGATTG 306 Query 362 TGTCAATGGGAGGCATCACCAAACAAGTTAAGAGAGAACTCATAGCGACCGTTGGTTCTA 421 ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| Sbjct 307 TGTCAATGGGAGGTATCACCAAACAAGTTAAGAGAGAACTTATCGCGACCGTTGGTTCTA 366 Query 422 TTCTTCACACTCATTTTTCTATTCATCCCACTCGTTTTATCTTTAAAGTTTTTGATATTA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 367 TTCTTCACACTCATTTTTCTATTCATCCCACTCGTTTTATCTTTAAAGTTTTTGATATCA 426 Query 482 ATTCTTTGCCTCTTCCTTCTAAACTTTAGT---GTTATGATCTTTGTATTGTTCATCAAA 538 ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 427 ATTCTTTACCTCTTCCTTCTAAACTGTAGTACTGTTATGATCTTTGTATTGTTCATCAAA 486 Query 539 CACAAATTATATA-CA-----G--A-CT--CACATGTTATTCTTTTCTTTATGAGTCTTC 587 |||| |||||||| || | | | |||||||| ||||||||||||||||||||| Sbjct 487 CACACATTATATATCATTCAAGTTAACCAACACATGTTTTTCTTTTCTTTATGAGTCTTC 546 Query 588 TCTATTTTTATGTTTACAAATCTTTTACTATTATATCATCATTCA-TGTAGATCTTGACC 646 ||||||||||||||||||| ||||||||| |||||||||||||| | |||||||||||| Sbjct 547 TCTATTTTTATGTTTACAAG-CTTTTACTACTATATCATCATTCAAT-TAGATCTTGACC 604 Query 647 CTATAATCTTAATATAAAACTT 668 ||||||||||||||||||||| Sbjct 605 GTATAATCTTAATATAAAACTT 626 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24818018967 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5