BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51730.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898070 jgi|Araly1|898070|Al_scaffold_0005_2036 1020 0.0
> Ahg898070 jgi|Araly1|898070|Al_scaffold_0005_2036
Length=642
Score = 1020 bits (552), Expect = 0.0
Identities = 613/643 (95%), Gaps = 2/643 (0%)
Strand=Plus/Plus
Query 204 ATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGATCTTGGTCTCTGAC 263
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGTCTAAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGATCTTGGTTTCTGAC 60
Query 264 GCTAGATCTTTCGTTGACTCCACCATCTCAGAGAAAGTTTCCAACAAGGAAGACGTTTGC 323
||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 61 GCTAGATCTTTTGTTGACTCCACCCTCTCAGAAAAAGTTTCCAATAAGGAAGACGTTTGC 120
Query 324 ACTCTGTGTGAGGAATATGTTACTGATGCTCTCAGCTACCTTGAGAAAAATGTCACACAA 383
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 ACTCTGTGTGAGGAATATGTTACTGAAGCTCTCAGCTACCTTGAGAAAAATGTCACACAA 180
Query 384 GCGGAGATCATCGAAGATCTTCATGATCGGTGTTCCCAATTGCGCGGATATTCGCAGCAG 443
|||||||| || || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 GCGGAGATTATTGAGGATCTTCATGATCGGTGTTCCCAATTGCGCGGATTTTCGCAGCAG 240
Query 444 TGCATAAGTTTGGTGGATTACTATGTTCCTCTTTTCTTCTTACAACTAGAGTCGTTTCAA 503
||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 241 TGCATAACTTTGGTTGATTACTATGTTCCTCTCTTCTTCTTACAACTGGAGTCGTTTCAA 300
Query 504 CCTCATTATTTCTGCAAGAGGATGAATCTTTGTGGCAAAGTTGTAGCTCTTGTCGAAGAA 563
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTCACTATTTCTGCAAGAGGATGAATCTTTGTGGCAAAGTTGTAGCTCTTGTCGAAGAA 360
Query 564 GCT-CGTCAGGACAGTTGCGGTGTATGCCACAGGACTGTTTCAGAGATTCTCATCAAACT 622
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 G-TCCGTCAGGACAGTTGCGGTGTATGCCACAGGACTGTTTCAGAGATTCTCATCAAACT 419
Query 623 ACAAGATCCTGACACACAGCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCT 682
||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 420 ACAAGATCCCGATACACAGCTGGATATCGTTGAACTGCTTCTCAAGGGATGTAAATCGCT 479
Query 683 CAAGAACTACGAGAAGAAGTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGT 742
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 480 CAAGAACTACGAGAAGAAGTGCAAGACGTTGGTGTTCGAATATGGACCTCTGATCCTCGT 539
Query 743 AAATGCAGAGGAATTCCTAGTGAAAAACGACGTCTGCACACTCTTGCGCGCATGCCCCCC 802
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 540 AAATGCAGAGGAATTCCTAGTGAAAAACGACGTCTGCACACTCTTACGCGCATGTCCGGC 599
Query 803 TGAGAAATCGGTTCTAAGGCAGCCGGAGTTGGCTGATTCTTGA 845
|||||||| |||||||||||||||||||||||| |||||||||
Sbjct 600 TGAGAAATTGGTTCTAAGGCAGCCGGAGTTGGCGGATTCTTGA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5