BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51820.1
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938046 jgi|Araly1|938046|scaffold_502237.1 1965 0.0
> Ahg938046 jgi|Araly1|938046|scaffold_502237.1
Length=1208
Score = 1965 bits (1064), Expect = 0.0
Identities = 1160/1208 (96%), Gaps = 0/1208 (0%)
Strand=Plus/Plus
Query 104 TTCTCTCTTCCGTCGGTTCTATGACTTCGATTCTCAACACTGTCTCCACCATCCACTCTT 163
||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| || |
Sbjct 1 TTCTCTCCTCCGTCGTTTCTATGACTTCGATTCTCAACACCGTCTCCTCCATCCATTCCT 60
Query 164 CCAGAGTTACCTCCGTCGATCGAGTCGGAGTCCTCTCTCTTCGGAATTCGGATTCCGTTG 223
||||||||||||||||||| ||||||||| | |||||||| |||||| |||||||||| |
Sbjct 61 CCAGAGTTACCTCCGTCGACCGAGTCGGATTTCTCTCTCTCCGGAATCCGGATTCCGTCG 120
Query 224 AGTTCACTCGCCGGCGTTCTGGTTTCTCGACGTTGATCTACGAATCACCCGGGCGGAGAT 283
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AGTTCACTCGCCGACGTTCTGGTTTCTCGACGTTGATCTTCGAATCACCCGGGCGGAGAT 180
Query 284 TTGTTGTGCGTGCGGCGGAGACTGATACTGATAAAGTTAAATCTCAGACACCTGACAAGG 343
||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 181 TTGTTGTGCGTGCGGCGGAGACTGATACTGATAAAGTTAAATCCCAGGCACCGGACAAGG 240
Query 344 CACCAGCCGGTGGTTCAAGCATTAACCAGCTTCTCGGTATCAAAGGAGCATCTCAAGAAA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACCAGCCGGTGGTTCAAGCATTAACCAGCTTCTCGGTATCAAAGGAGCATCTCAAGAAA 300
Query 404 CTAATAAATGGAAGATTCGTCTTCAGCTTACAAAACCAGTCACTTGGCCTCCACTGGTTT 463
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 301 CTAATAAATGGAAGATTCGTCTTCAGCTTACAAAGCCAGTCACCTGGCCTCCATTGGTTT 360
Query 464 GGGGAGTCGTCTGTGGTGCTGCTGCTTCAGGGAACTTTCATTGGACCCCAGAGGATGTTG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGGAGTCGTCTGTGGTGCTGCTGCTTCAGGGAACTTTCATTGGACCCCAGAGGATGTTG 420
Query 524 CTAAGTCGATTCTTTGCATGATGATGTCTGGTCCTTGTCTTACTGGCTATACACAGACAA 583
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 421 CTAAGTCGATTCTTTGCATGATGATGTCTGGCCCATGTCTTACTGGCTATACACAGACAA 480
Query 584 TCAACGACTGGTATGATAGAGATATCGACGCAATTAATGAGCCATATCGTCCAATTCCAT 643
||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 481 TCAACGACTGGTATGATCGAGATATTGACGCAATTAATGAGCCGTATCGACCAATTCCAT 540
Query 644 CTGGAGCAATATCAGAGCCAGAGGTTATTACACAAGTCTGGGTGCTATTATTGGGAGGTC 703
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 CTGGAGCAATATCAGAGCAAGAGGTTATTACACAAGTCTGGGTGCTGTTATTGGGAGGTC 600
Query 704 TTGGTATTGCTGGAATATTAGATGTGTGGGCAGGGCATACCACTCCCACTGTCTTCTATC 763
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 601 TTGGAATTGCTGGAATATTAGATGTGTGGGCAGGGCATACCACGCCCACTGTGTTCTATC 660
Query 764 TTGCTTTGGGAGGATCATTGCTATCTTATATATACTCTGCTCCACCTCTTAAGCTAAAAC 823
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGCTCTGGGAGGATCATTGCTATCTTATATATACTCTGCTCCACCTCTTAAGCTAAAAC 720
Query 824 AAAATGGATGGGTTGGAAATTTTGCACTTGGAGCAAGCTATATTAGTTTGCCATGGTGGG 883
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 721 AAAATGGATGGGTTGGGAATTTTGCACTTGGAGCAAGCTACATCAGTTTGCCATGGTGGG 780
Query 884 CTGGCCAAGCATTGTTTGGCACTCTTACGCCAGATGTTGTTGTTCTAACACTCTTGTACA 943
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 781 CTGGCCAAGCATTGTTTGGCACTCTTACACCAGACGTTGTTGTTCTAACACTTTTGTACA 840
Query 944 GCATAGCTGGGTTAGGAATAGCCATTGTTAACGACTTCAAAAGTGTTGAAGGAGATAGAG 1003
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 841 GCATAGCTGGGTTAGGAATAGCCATTGTTAATGACTTCAAAAGTGTTGAAGGAGACAGAG 900
Query 1004 CATTAGGACTTCAGTCTCTCCCAGTAGCTTTTGGCACCGAAACTGCAAAATGGATATGCG 1063
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 CATTAGGACTTCAGTCTCTCCCAGTAGCTTTTGGCACTGAAACTGCAAAATGGATATGCG 960
Query 1064 TTGGTGCTATAGACATTACTCAGCTTTCTGTTGCCGGATATCTATTAGCATCTGGGAAAC 1123
|||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 961 TTGGTGCTATAGACGTTACTCAGCTCTCTGTTGCTGGATATCTATTAGCATCTGGCAAAC 1020
Query 1124 CTTATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGTTTAAAT 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTTATTATGCGTTGGCGTTGGTTGCTTTGATCATTCCTCAGATTGTGTTCCAGTTTAAAT 1080
Query 1184 ACTTTCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGGCAAGCGCGCAGCCATTCT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACTTTCTCAAGGACCCTGTCAAATACGACGTCAAGTACCAGGCAAGCGCGCAGCCATTCT 1140
Query 1244 TGGTGCTCGGAATATTTGTAACGGCATTAGCATCGCAACACTGAAAAAGGCGTATTTTGA 1303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1141 TGGTGCTCGGCATATTTGTAACGGCATTAGCATCGCAACACTGAAAAAGGCGTATGTTGA 1200
Query 1304 TGGGGTTT 1311
||| ||||
Sbjct 1201 TGGAGTTT 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59382691955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5