BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51870.1
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938054 jgi|Araly1|938054|scaffold_502245.1 1840 0.0
Ahg336024 jgi|Araly1|336024|fgenesh1_pg.C_scaffold_1002589 444 1e-123
> Ahg938054 jgi|Araly1|938054|scaffold_502245.1
Length=1193
Score = 1840 bits (996), Expect = 0.0
Identities = 1134/1200 (95%), Gaps = 11/1200 (1%)
Strand=Plus/Plus
Query 6 TCTTCTTCTTCCCTCTCTACAA-CATGGAAGAAGACAGAGCGATTCTCACTTTTCACCGT 64
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCTTCTTCCCTCTCTAAAACCATGGAAGAAGACAGAGCGATTCTCACTTTTCACCGT 60
Query 65 ATCCCTTCCCTCAATTCCTCCTTAATAACAACCTCTTCTCCGGCCAAATCCGGCGCCGAA 124
|||||||| ||||||||||||||| | | |||||||||| |||||||||||| |||
Sbjct 61 ATCCCTTCTCTCAATTCCTCCTTACT---ATCCTCTTCTCCTGCCAAATCCGGCACCGTT 117
Query 125 CAGTTTCGCCGCCGTGTTCTGCGAAATCCAGCTCGCGGAGATTTCGGTTTAGGTAGATTC 184
|| |||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 118 CAATTTCGCCGCCGTGTCCTGCGAAATTCGGCTCGCGGAGAGTTCGGTTTAGGTAGATTC 177
Query 185 GCGTGCATTTCACTCGTGGAG-AA-GT-GCGAACAGAGAGAATTCGCTCCGACGACAGCT 241
||||||||||| || |||||| || || | || ||||||||||||||||||||||| |||
Sbjct 178 GCGTGCATTTCTCTGGTGGAGAAATGTGGTGAGCAGAGAGAATTCGCTCCGACGACGGCT 237
Query 242 CAGCTCTTGAACAATCCTCTAGCTATTCTTGCTCTTGTCCCTAAGGATGCAGCTATTTTT 301
|||||||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||
Sbjct 238 CAGCTCTTGAACAATCCTCTTGCTATTCTTGCTCTTGTTCCAAAAGATGCCGCTATCTTC 297
Query 302 GCCGCCGGTGCTCTTGCCGGAGCCGCCGCTAAAACTGTTACTGCTCCTCTTGACCGTATC 361
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 GCCGCCGGTGCTATTGCCGGAGCTGCCGCTAAAACTGTTACTGCTCCTCTTGACCGTATC 357
Query 362 AAACTTCTTATGCAGACACATGGTATAAGACTTGGACAACAGAGTGCGAAGAAGGCGATA 421
|| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 358 AAGCTTCTTATGCAGACACATGGTATACGACTTGGACATCAGAGTGCGAAGAAAGCGATA 417
Query 422 GGATTTATCGAGGCAATCACTTTGATAGCTAAAGAAGAAGGAGTTAAAGGTTATTGGAAA 481
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 418 GGATTTATCGAGGCAATCACTTTGATAGCTAAAGAAGAAGGAGTGAAAGGTTATTGGAAG 477
Query 482 GGAAATTTACCTCAGGTGATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTAT 541
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGAAATTTACCTCAGGTTATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTAT 537
Query 542 GAGAGTTACAAGAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATCGGAAGACTT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAGAGTTACAAGAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATCGGAAGACTT 597
Query 602 GCAGCTGGTGCTTGTGCTGGCATGACATCTACTTTGTTGACATACCCTCTAGATGTTTTG 661
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCCGCGGGTGCTTGTGCTGGCATGACATCTACTTTGTTGACATACCCTCTAGATGTTTTG 657
Query 662 AGATTGAGGTTGGCTGTCGAACCTGGGTATCGAACAATGTCTCAGGTTGCTTTGAGTATG 721
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 CGATTGAGGTTGGCTGTCGAACCTGGGTATCGAAAAATGTCTCAGGTTGCTTTGAGTATG 717
Query 722 CTCCGTGATGAAGGAATCGCATCTTTCTATTACGGTCTAGGACCTTCTCTAGTGGGGATA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTCCGTGATGAAGGAATCGCATCTTTCTATTACGGTCTAGGACCTTCTCTAGTGGGGATA 777
Query 782 GCTCCATATATTGCTGTAAACTTTTGTATTTTCGATCTGGTGAAGAAGTCTTTACCGGAG 841
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 GCTCCATACATTGCTGTAAACTTTTGTATCTTCGATCTGGTGAAGAAGTCTTTACCGGAG 837
Query 842 GAATATAGAAAGAAGGCACAATCGTCTCTATTAACAGCTGTTCTCTCAGCTGGTATTGCA 901
||||||||| ||||||| |||||||||||| | ||||||||||| |||||||||||||||
Sbjct 838 GAATATAGACAGAAGGCGCAATCGTCTCTACTCACAGCTGTTCTTTCAGCTGGTATTGCA 897
Query 902 ACACTGACATGTTACCCTCTAGACACTGTGAGACGGCAAATGCAAATGAGAGGAACTCCA 961
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 ACACTGACATGTTACCCTCTAGACACTGTGAGACGACAAATGCAAATGAGAGGAACTCCA 957
Query 962 TACAAATCAATTCCGGAGGCATTTGCTGGAATTATAGACCGTGATGGGCTTATAGGCTTG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TACAAATCAATTCCGGAGGCATTTGCTGGAATTATAGACCGTGATGGGCTTATAGGCTTG 1017
Query 1022 TACCGCGGCTTTTTACCCAATGCATTGAAAACTCTACCAAACAGCAGTATTAGGCTTACA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TACCGCGGCTTTTTACCCAATGCATTGAAAACTCTACCAAACAGCAGTATTAGGCTTACA 1077
Query 1082 ACCTTCGACATGGTAAAGCGCCTTATCGCCACAAGTGAGAAGCAGCTTCAAAAGATCAGC 1141
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1078 GCTTTCGACATGGTAAAACGCCTTATCGCCACAAGTGAGAAGCAGCTTCAAAAGATCAAC 1137
Query 1142 GATGATAATCGGAATCGAGACCAAGCTCAATAACAAACCACATTTTTGGAATATAATTGT 1201
|||||||||||||||||||||||| ||||||| | | ||||||| |||||||||||
Sbjct 1138 GATGATAATCGGAATCGAGACCAAACTCAATAGC---CG-CATTTTTTAAATATAATTGT 1193
> Ahg336024 jgi|Araly1|336024|fgenesh1_pg.C_scaffold_1002589
Length=771
Score = 444 bits (240), Expect = 1e-123
Identities = 276/294 (94%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 879 CTGTTCTCTCAGCTGGTATTGCAACACTGACATGTTACCCTCTAGACACTGTGAGACGGC 938
||||||| || |||||||| |||||||| ||||||||||||||| | ||||||||| |||
Sbjct 476 CTGTTCTTTCGGCTGGTATCGCAACACTCACATGTTACCCTCTACAAACTGTGAGATGGC 535
Query 939 AAATGCAAATGAGAGGAACTCCATACAAATCAATTCCGGAGGCATTTGCTGGAATTATAG 998
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 536 AAATGCAAATGAGAGGAACTCCATACAAATCAATTCCGGAAGCATTTGCTCGAATTATAG 595
Query 999 ACCGTGATGGGCTTATAGGCTTGTACCGCGGCTTTTTACCCAATGCATTGAAAACTCTAC 1058
|||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 596 ACCGTGATGGTCTTATAGGATTGTACCGCGGCTTTTTACCCAATGCATTGAAGACTCTAC 655
Query 1059 CAAACAGCAGTATTAGGCTTACAACCTTCGACATGGTAAAGCGCCTTATCGCCACAAGTG 1118
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 656 CAAACAGCAGTATTAGGCTTACAACCTTGGACATGGTAAAACGCCTTATCGCCACAAGTG 715
Query 1119 AGAAGCAGCTTCAAAAGATCAGCGATGATAATCGGAATCGAGACCAAGCTCAAT 1172
|||||||| |||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct 716 AGAAGCAGTTTCAAAAGATCAACGATGATAATGGGAATCGAGAACAAGCTCAAT 769
Score = 158 bits (85), Expect = 1e-37
Identities = 92/95 (97%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 703 TCAGGTTGCTTTGAGTATGCTCCGTGATGAAGGAATCGCATCTTTCTATTACGG-TCTAG 761
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 381 TCAGGTTGCTTTGAGTATGCTCCGTGATGAAGGAATCACATCTTTCTATTACGGTTCTAG 440
Query 762 GACCTTCTCTAGTGGGGATAGCTCCATATATTGCT 796
|||||||||||||||||||||||||||| ||||||
Sbjct 441 GACCTTCTCTAGTGGGGATAGCTCCATACATTGCT 475
Score = 137 bits (74), Expect = 2e-31
Identities = 89/96 (93%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 543 AGAGTTACAAGAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATC-GGAAGACTT 601
|||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 264 AGAG-TGCAATAACTTGTTCAAAGGTAAAGATGATCAGCTCTCAGTAATCTGGAAGACTT 322
Query 602 GCAGCTGGTGCTTGTGCTGGCATGACATCTACTTTG 637
|| |||||||||||||||| |||||||||| |||||
Sbjct 323 GCGGCTGGTGCTTGTGCTGTCATGACATCTTCTTTG 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56106930885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5