BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G51880.2

Length=959
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323737 jgi|Araly1|323737|fgenesh1_pm.C_scaffold_5001281           887    0.0  


> Ahg323737 jgi|Araly1|323737|fgenesh1_pm.C_scaffold_5001281
Length=558

 Score =  887 bits (480),  Expect = 0.0
 Identities = 539/565 (95%), Gaps = 14/565 (2%)
 Strand=Plus/Plus

Query  152  ATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTT  211
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTT  60

Query  212  GATGACAGAAAGGTGGGAAAGAGGAAGGCACCGGCTGAGAAGCCTACTAAACGAGAGACT  271
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   GATGACAGAAAGGTGGGAAAGAGGAAGGCACCGGCTGAGAAGGCTACTAAACGAGAGACT  120

Query  272  CGTAAAGAGAAGAAGGCTAAAAAGGACCCAAACAAACCAAAAAGAGCTCCTAGTGCCTTC  331
            ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  121  CGTAAAGAGAAGAAGGCTAAAAAAGACCCAAACAAACCGAAAAGAGCTCCTAGTGCCTTC  180

Query  332  TTTGTCTTTCTAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCC  391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTGTCTTTCTAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCC  240

Query  392  GTCTCTGCTGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCTGAAAAA  451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTCTCTGCTGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCTGAAAAA  300

Query  452  GCTCCATATGAAGAGAAAGCTGCAAAAAGGAAAGCTGAATATGAGAAGCAAATGGATGCA  511
            |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  301  GCTCCATATGAAGAGAAAGCTGCAAGGAGGAAAGCTGAATATGAGAAGCAAATGGATGCA  360

Query  512  TACAACAAAAACTTGGAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAAT  571
            |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct  361  TACAACAAAAACATGGAGGAAGGGAGTGATGAATCTGAGAAGTCTAGATCTGAGGTGAAT  420

Query  572  GATGAAGATGAAGCCAGTGGGGAGGTAACAATTCCACTA-AGCAa--t--ga-a-gaact  624
            ||||||||||||||||||||||||||||||||||||||| | |||  |  || | |||||
Sbjct  421  GATGAAGATGAAGCCAGTGGGGAGGTAACAATTCCACTATA-CAAGATAAGAGAAGAACT  479

Query  625  attagagaaggaagcggcaggtgatgatgaagaagaagaagaggaagaagatgacgatga  684
            | ||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||
Sbjct  480  ACTAGAGAAGGAAGCGGCAGGTGATGATGAAGAAGAAGAAGAGGATGA---TGACGATGA  536

Query  685  tgatgacgacgaggaagaagacTAA  709
            ||||||||| | | |||||||||||
Sbjct  537  TGATGACGA-G-G-AAGAAGACTAA  558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35606804478


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5