BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51880.2 Length=959 Score E Sequences producing significant alignments: (Bits) Value Ahg323737 jgi|Araly1|323737|fgenesh1_pm.C_scaffold_5001281 887 0.0 > Ahg323737 jgi|Araly1|323737|fgenesh1_pm.C_scaffold_5001281 Length=558 Score = 887 bits (480), Expect = 0.0 Identities = 539/565 (95%), Gaps = 14/565 (2%) Strand=Plus/Plus Query 152 ATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTT 211 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAGACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTT 60 Query 212 GATGACAGAAAGGTGGGAAAGAGGAAGGCACCGGCTGAGAAGCCTACTAAACGAGAGACT 271 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 GATGACAGAAAGGTGGGAAAGAGGAAGGCACCGGCTGAGAAGGCTACTAAACGAGAGACT 120 Query 272 CGTAAAGAGAAGAAGGCTAAAAAGGACCCAAACAAACCAAAAAGAGCTCCTAGTGCCTTC 331 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 121 CGTAAAGAGAAGAAGGCTAAAAAAGACCCAAACAAACCGAAAAGAGCTCCTAGTGCCTTC 180 Query 332 TTTGTCTTTCTAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCC 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTGTCTTTCTAGAAGATTTTAGGGTCACGTTCAAGAAAGAAAATCCAAATGTGAAGGCC 240 Query 392 GTCTCTGCTGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCTGAAAAA 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTCTCTGCTGTTGGGAAAGCTGGAGGGCAGAAATGGAAGTCAATGTCTCAAGCTGAAAAA 300 Query 452 GCTCCATATGAAGAGAAAGCTGCAAAAAGGAAAGCTGAATATGAGAAGCAAATGGATGCA 511 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 GCTCCATATGAAGAGAAAGCTGCAAGGAGGAAAGCTGAATATGAGAAGCAAATGGATGCA 360 Query 512 TACAACAAAAACTTGGAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAAT 571 |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||| Sbjct 361 TACAACAAAAACATGGAGGAAGGGAGTGATGAATCTGAGAAGTCTAGATCTGAGGTGAAT 420 Query 572 GATGAAGATGAAGCCAGTGGGGAGGTAACAATTCCACTA-AGCAa--t--ga-a-gaact 624 ||||||||||||||||||||||||||||||||||||||| | ||| | || | ||||| Sbjct 421 GATGAAGATGAAGCCAGTGGGGAGGTAACAATTCCACTATA-CAAGATAAGAGAAGAACT 479 Query 625 attagagaaggaagcggcaggtgatgatgaagaagaagaagaggaagaagatgacgatga 684 | ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 480 ACTAGAGAAGGAAGCGGCAGGTGATGATGAAGAAGAAGAAGAGGATGA---TGACGATGA 536 Query 685 tgatgacgacgaggaagaagacTAA 709 ||||||||| | | ||||||||||| Sbjct 537 TGATGACGA-G-G-AAGAAGACTAA 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35606804478 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5