BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51890.1 Length=1067 Score E Sequences producing significant alignments: (Bits) Value Ahg485546 jgi|Araly1|485546|fgenesh2_kg.5__1538__AT3G51890.1 1182 0.0 > Ahg485546 jgi|Araly1|485546|fgenesh2_kg.5__1538__AT3G51890.1 Length=896 Score = 1182 bits (640), Expect = 0.0 Identities = 821/901 (91%), Gaps = 41/901 (5%) Strand=Plus/Plus Query 149 ATGGCGGCGACGGAGGAAACTTCACGGCTTACGAGTCTCGATTCCAGTCGCAGCGGTTTG 208 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 8 ATGGTGGCGACGGAGGAAACTTCACGGTTTACGAGTCTCGATTCCAGTCGCAGCGGTTTG 67 Query 209 ACTCTTCCTTCTCTAATTTTGACTCCCAACCGGAGAAAGAGTCAGACTTACCATGCGGCG 268 |||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||| || Sbjct 68 ACTCGTCCTTCTCGAATTTTGACTCCCAACCAGAGAAAGAGTCAGACTTACCAGGCGACG 127 Query 269 ATTCATCT-C-C---T----C-----G----ACCCGAAACTCAATCTCCGCCGTCGATAA 310 |||| ||| | | | | | ||| ||||||||||||||||||| ||||| Sbjct 128 ATTCGTCTCCTCAATTAAACCAGAAGGAATTACCGGAAACTCAATCTCCGCCGTTGATAA 187 Query 311 ATAGTTTCGATGATACAAACGATTCGATCTTGCCGCCACCATCGGCCATGGAGAAAGAGG 370 | ||||| |||||||| |||| |||||||||||| || |||||||||||||||||||||| Sbjct 188 ACAGTTTAGATGATACGAACGGTTCGATCTTGCCTCCTCCATCGGCCATGGAGAAAGAGG 247 Query 371 AAGGTTTCGCTCTTAGAGAGTGGCGAAGGCTAAATGCTCTGAGATTGgaagagaaagaaa 430 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 248 AAGGTTTTGCTCTTAGGGAGTGGCGAAGGCTAAATGCTCTGAGATTGGAAGAGAAAGAAA 307 Query 431 aggaagagaaagaaaTGGTTCAACAAATTCTAGAAGCAGCAGAGCAATATAAGGCTGAGT 490 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 308 AGGAAGAGAAAGAAATGGTTCAACAAATTATAGAAGCAGCAGAGCAATACAAGGCTGAGT 367 Query 491 TCTATAGCAAGCGTAACGTTACTATTGAAAACAACAAGAAACTAAACCGCGAGAAAGAGA 550 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 368 TCTATAGCAAGCGTAACGTTACTATTGAAAACAACAAGAAATTGAACCGCGAGAAAGAGA 427 Query 551 AGttttttttGGAGAATCAAGAAAAGTTTTACGCTGAAGCTGACAAAAACAATTGGAAGG 610 |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 428 AGTTGTTTTTGGAGAATCAAGAAAAGTTTTACGCTGAAGCGGACAAAAACAACTGGAAGG 487 Query 611 CGATTGCAGAACTCATTCCTCGTGAAGTGCCAGTTATAGAGAATAGAGGGAACAAGAAGA 670 ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 488 CGATTGCGGAACTCATTCCTCGTGAAGTACCAGTTATAGAGAATAGAGGGAATAAGAAGA 547 Query 671 AAACAGCAACCATAACTGTAATCCAGGGACCAAAGCCAGGGAAGCCCACTGATCTGTCTC 730 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 548 AAACAGCAACCATAACTGTGATCCAGGGACCAAAGCCAGGGAAGCCCACTGATCTGTCTC 607 Query 731 GTATGCGTCAAGTGCTCACGAAACTCAAGCACAATCCGCCAACTCATATGAAGCCAAAAC 790 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 608 GTATGCGTCAAGTGCTCACGAAGCTCAAGCACAATCCGCCAACTCATATGAAGCCAAAAT 667 Query 791 TGCCCTCACCATCTGGAGCTGACCCGAATGTGAGTGTGAGTGAACAGGTCACAGTTACAG 850 |||||||||||||||||||||||||||||||||||| | || ||||||||| ||||| Sbjct 668 TGCCCTCACCATCTGGAGCTGACCCGAATGTGAGTG--A---AA-AGGTCACAGATACAG 721 Query 851 AGAAGTTGTAGTT-GTGTATGTGACAAGTT-AACTTCTTCTTGATTGATGTT-AAA-CCG 906 ||||||||||||| |||| ||||||| ||| |||||||| | ||| |||| ||| ||| Sbjct 722 AGAAGTTGTAGTTTGTGTTTGTGACA-GTTTAACTTCTT-T--ATT--TGTTGAAAACCG 775 Query 907 TCTTTACTTTGTTAGCTTCCCTCATGTTCAGTCTCGACTATTGTTTGTTTTGATTTCGTC 966 |||||||||||||||||||| |||||||||||||||| | |||||||||||| |||| || Sbjct 776 TCTTTACTTTGTTAGCTTCCTTCATGTTCAGTCTCGAATTTTGTTTGTTTTGGTTTCATC 835 Query 967 TTTGGTCTTACCA-TT------GTTGGTTTCCCACACAGTTTTCTACTTTGATGTATATA 1019 ||||||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 836 TTTGGTCTTACCAATTACCATTGTTGGTTTCCCACACAGTTTTCAACTTTGATGTATATA 895 Query 1020 T 1020 | Sbjct 896 T 896 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39724079514 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5