BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G51895.1
Length=2276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485547 jgi|Araly1|485547|fgenesh2_kg.5__1539__AT3G51895.1 3219 0.0
> Ahg485547 jgi|Araly1|485547|fgenesh2_kg.5__1539__AT3G51895.1
Length=2184
Score = 3219 bits (1743), Expect = 0.0
Identities = 2067/2217 (93%), Gaps = 47/2217 (2%)
Strand=Plus/Plus
Query 1 ATTCCTCACTTCCAACCGCcaaa-gaaaaaaatcaaaaactccaac--------aaaaaa 51
||||||||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 1 ATTCCTCACTTCCAACCGCCAAAGGAAAAAAAACAAAAACTCCAACAAAAAAAAAAAAAA 60
Query 52 aaCCTCCCAAACCCTACCCGAGCAGTCGCCAGATGGGCACGGAGGACTACACATTCCCTC 111
||| ||||||||||||||||||| |||| || ||||| |||||||| |||||||||||||
Sbjct 61 AACTTCCCAAACCCTACCCGAGCGGTCGTCAAATGGGTACGGAGGATTACACATTCCCTC 120
Query 112 AAGGAGCGGAGGAGCT---TCACCGCCGCCACCACACGGTGGAGGCTCCACAACCTCAAC 168
||||| |||||||||| ||||||| |||||||||||||||||||||||| ||||| |
Sbjct 121 AAGGACCGGAGGAGCTGCACCACCGCCACCACCACACGGTGGAGGCTCCACAGCCTCAGC 180
Query 169 CGTTCTTGAAGTCACTTCAGTACTCAGTGAAGGAAACTCTGTTTCCAGACGACCCTTTTA 228
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CGTTCTTGAAGTCACTTCAGTACTCAGTGAAGGAAACTCTGTTTCCGGACGACCCTTTTA 240
Query 229 GACAATTTAAGAACCAAAATGCATCAAGAAAATTTGTGTTAGGCCTCAAATACTTCCTCC 288
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 241 GACAATTTAAGAACCAGAATGCATCAAGAAAAGTTGTATTAGGCCTCAAATACTTCCTCC 300
Query 289 CGATTTTCGAATGGGCACCACGCTACAATCTCAAGTTCTTCAAATCAGATCTCATCGCCG 348
||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 301 CGATTGTCGAATGGGCTCCACGCTACAATCTTAAGTTCTTCAAATCAGATCTCATTGCCG 360
Query 349 GAATCACCATCGCTAGTCTCGCCATCCCTCAGGGCATCAGTTACGCCAAACTTGCTAACT 408
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 361 GAATCACCATCGCTAGTCTCGCCATCCCTCAGGGCATCAGTTACGCCAAACTCGCCAATT 420
Query 409 TGCCCCCAATTCTTGGCCTTTATTCGAGTTTTGTACCGCCATTGGTATACGCGGTGCTAG 468
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 TGCCCCCAATTCTTGGCCTTTATTCGAGTTTTGTACCGCCATTGGTGTACGCGGTGCTAG 480
Query 469 GGAGTTCAAGGGACTTAGCGGTGGGAACGGTTGCGGTTGCGTCTCTGTTGACAGGTGCGA 528
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 481 GGAGTTCAAGGGATTTAGCGGTGGGAACGGTTGCGGTTGCGTCTCTTTTGACAGGTGCCA 540
Query 529 TGCTGAGCAAAGAAGTTGATGCTGAGAAAGATCCTAAGCTTTACCTTCACCTTGCTTTCA 588
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCTGAGCAAAGAAGTCGATGCTGAGAAAGATCCTAAGCTTTACCTTCACCTTGCTTTCA 600
Query 589 CCGCCACTTTTTTCGCCGGCGTTCTCGAAGCCTCTCTTGGAATTTTCAGGTTAGGGTTCA 648
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 601 CAGCCACTTTTTTCGCCGGCGTTTTCGAAGCCTCTCTTGGATTTTTCAGGTTAGGGTTCA 660
Query 649 TAGTGGACTTTCTATCGCATGCAACGATAGTAGGATTCATGGGAGGAGCAGCGACGGTGG 708
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 TAGTGGATTTTCTATCGCATGCAACAATAGTAGGATTCATGGGAGGAGCAGCGACGGTGG 720
Query 709 TGAGTCTGCAACAGCTTAAGGGTATTTTCGGACTTAAACATTTCACAGACTCTACCGATG 768
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 721 TGAGTCTGCAACAGCTTAAGGGTATTTTCGGACTTAAACATTTCACAGACGCCACTGATG 780
Query 769 TTATCTCTGTCATGCGTTCCGTTTTCTCCCAAACTCACGAGTGGAGATGGGAAAGTGGCG 828
||||||| || |||||||||||||||| ||||||||| ||||||||||||| |||||||
Sbjct 781 TTATCTCCGTTTTGCGTTCCGTTTTCTCACAAACTCACCAGTGGAGATGGGAGAGTGGCG 840
Query 829 TTCTTGGATGTGGTTTTCTATTCTTTCTTCTCTCCACCAGATATTTCAGCATC-AAGAAA 887
|||| || |||||||| || |||||||||||||| |||||||||||||||| | ||||||
Sbjct 841 TTCTCGGCTGTGGTTTCCTTTTCTTTCTTCTCTCTACCAGATATTTCAGCA-CGAAGAAA 899
Query 888 CCAAAATTCTTTTGGGTGGCGGCGATGGCTCCTTTGACCTCAGTGATTCTTGGAAGTCTC 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CCAAAATTCTTTTGGGTGGCGGCGATGGCTCCTTTGACCTCAGTGATTCTTGGAAGTCTC 959
Query 948 TTGGTTTACTTCACTCACGCTGAGAGACATGGTGTTCAAGTGATAGGGGACCTGAAGAAA 1007
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 TTGGTTTACTTCACTCACGCTGAGAGACATGGTGTTCAAGTGATAGGGGACTTGAAGAAA 1019
Query 1008 GGGTTGAATCCACTCTCCGGTTCTGATCTCATCTTTACTTCCCCTTACATGTCCACAGCT 1067
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1020 GGGTTGAATCCACTCTCCGGTTCTGATCTCATCTTTACTTCGCCTTATATGTCGACAGCT 1079
Query 1068 GTCAAAACTGGCCTCATCACTGGCATCATTGCTCTCGCTGAAGGAGTAGCAGTGGGGAGG 1127
|| || ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1080 GTTAAGACTGGCCTCATCACTGGCATCATTGCTCTCGCTGAAGGAATAGCTGTGGGGAGG 1139
Query 1128 AGTTTTGCGATGTTCAAGAACTACAACATAGACGGGAACAAAGAGATGATAGCGTTTGGA 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGTTTTGCGATGTTCAAGAACTACAACATAGACGGGAACAAAGAGATGATAGCGTTTGGA 1199
Query 1188 ATGATGAACATCGTTGGTTCCTTCACATCTTGTTACCTCACAACCGGACCATTTTCAAGG 1247
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1200 ATGATGAACATCGTTGGGTCCTTCACATCTTGTTACCTCACAACGGGGCCATTTTCAAGG 1259
Query 1248 TCGGCAGTGAACTACAACGCGGGTTGCAAGACCGCAATGTCCAACATAGTGATGGCGATT 1307
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1260 TCGGCCGTGAACTACAACGCGGGTTGCAAGACGGCAATGTCCAACATAGTGATGGCGATT 1319
Query 1308 GCGGTTATGTTCACACTCCTCTTCCTCACACCGCTTTTTCACTACACACCACTCGTCGTC 1367
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1320 GCGGTTATGTTCACACTCCTCTTCCTCACGCCGCTTTTTCACTACACACCACTTGTCGTC 1379
Query 1368 CTCTCTGCCATCATCATATCCGCAATGCTCGGACTCATTGACTATCAAGCTGCCATCCAT 1427
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1380 CTCTCCGCCATCATCATATCCGCAATGCTCGGCCTCATTGACTATCAAGCTGCCATTCAT 1439
Query 1428 CTCTGGAAAGTTGACAAGTTCGACTTCCTCGTCTGCATGAGCGCCTACGTTGGGGTCGTA 1487
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CTCTGGAAAGTCGACAAGTTCGACTTCCTCGTCTGCATGAGCGCCTACGTTGGGGTCGTA 1499
Query 1488 TTCGGCAGTGTAGAGATTGGACTCGTCGTAGCGGTGGCGATATCTATAGCGAGGTTGTTG 1547
|||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||||
Sbjct 1500 TTCGGCAGTGTAGAGATTGGACTCATCGTCGCAGTGGCGATATCGATAGCGAGGTTGTTG 1559
Query 1548 CTGTTTGTGTCGAGGCCAAAAACTGCGGTGAAGGGAAACATACCAAACAGCATGATCTAT 1607
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1560 CTGTTTGTGTCGAGGCCAAGAACCGCGGTGAAGGGAAACATACCAAACAGCATGATCTAT 1619
Query 1608 AGGAACACTGAGCAGTACCCATCATCAAGAACCGTTCCTGGTATTCTCATCTTGGAGATT 1667
||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct 1620 AGGAACACTGAGCAGTACCCATCCTCAAGAACTGTCCCTGGCATTCTTATCTTGGAGATT 1679
Query 1668 GATGCTCCCATCTACTTTGCTAATGCCAGTTACTTGCGTGAAAGAATCATAAGGTGGATT 1727
|||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||
Sbjct 1680 GATGCTCCCATCTACTTTGCCAACGCCAGTTACTTACGTGAAAGGATCATAAGGTGGATT 1739
Query 1728 GATGAAGAGGAAGAGAGAGTTAAACAATCAGGAGAGAGCAGCTTACAATATATTATACTC 1787
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1740 GATGAAGAGGAAGAGAGAGTCAAACAATCAGGAGAAAGCAGTTTACAATATATTATACTC 1799
Query 1788 GATATGTCAGCTGTTGGTAATATCGACACAAGCGGTATTAGCATGATGGTGGAAATTAAG 1847
||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct 1800 GATATGTCAGCTGTTGGTAATATCGACACCAGCGGTATAAGCATGATGGAGGAAATTAAG 1859
Query 1848 AAAGTCATTGA-CAGGAGAGCGTTAAAGTTGGTATTGTCAAATCCAAAAGGAGAGGTCGT 1906
|||||||| || | | ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1860 AAAGTCATCGATC-GAAGAGCGTTAAAGTTGGTATTGGCAAATCCAAAAGGAGAGGTGGT 1918
Query 1907 GAAGAAATTAACCAGATCCAAATTCATCGGTGATCATTTGGGCAAAGAGTGGATGTTCTT 1966
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GAAAAAATTAACCAGATCCAAATTCATCGGTGATCATTTGGGCAAAGAGTGGATGTTCTT 1978
Query 1967 AACGGTAGGAGAAGCAGTGGAGGCTTGTAGCTACATGCTTCACACGTTTAAAACCGAACC 2026
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 AACAGTAGGAGAAGCTGTGGAGGCTTGTAGCTACATGCTTCACACGTTTAAAACCGAACC 2038
Query 2027 GGCCTCCAAAAACGAGCCTTGGAACAACGTATAGTTCCTTTATTTTTTGCTGTCGTTCTG 2086
||||||||||||||||||||||||||||||||||||| || ||| || |||| |
Sbjct 2039 GGCCTCCAAAAACGAGCCTTGGAACAACGTATAGTTCGTT-ATTAA---CTA--GTTC-G 2091
Query 2087 TGACTACTCGTTATTAACTAATCCGATGTAAACTTAAATTAAAAACTGAAACTCATTTTG 2146
| | | | | | |||| | ||||| ||| || | |||||||||||||
Sbjct 2092 --A-TG-T-G--A--A-CTAA----A-GTAAA---AAA--AA---C-GAAACTCATTTTG 2127
Query 2147 TAATATTGATGATGAGCCATATGCAATATATATGCACTCTTATTGTAGTGTTATGGA 2203
|||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||
Sbjct 2128 TAATATTGATGATGAGTCACATGCAATATATATGTACTCTTATTTTAGTGTTATGGA 2184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85703051250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5