BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G51920.1 Length=756 Score E Sequences producing significant alignments: (Bits) Value Ahg938059 jgi|Araly1|938059|scaffold_502250.1 797 0.0 > Ahg938059 jgi|Araly1|938059|scaffold_502250.1 Length=496 Score = 797 bits (431), Expect = 0.0 Identities = 477/499 (96%), Gaps = 4/499 (1%) Strand=Plus/Plus Query 144 ACTTTTCTTTGTGATCGAAGATATGGCGGATGCTTTCACAGATGAACAGATCCAAGAGTT 203 |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1 ACTTTTCTTTGTGATCGAAG--ATGGCTGATGCTTTCACAGATGAACAGATCCAAGAGTT 58 Query 204 TTACGAAGCCTTCTGTCTCATAGACAAAGATTCCGATGGGTTCATCACGAAGGAGAAGCT 263 ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 59 TTACGAAGCATTCTGTCTCATCGACAAAGATTCCGATGGGTTTATCACGAAGGAGAAGCT 118 Query 264 AACGAAAGTGATGAAGTCGATGGGGAAGAATCCAAAGGCGGAACAACTGCAACAGATGAT 323 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 119 AACGAAAGTGATGAAGTCGATGGGGAAGAATCCGAAGGCGGAACAACTCCAACAGATGAT 178 Query 324 GAGCGATGTTGACATCTTTGGCAACGGTGGCATCACTTTTGATGATTTCTTGTATATTAT 383 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GAGTGATGTCGACATCTTCGGCAACGGTGGCATCACTTTTGATGATTTCTTGTATATTAT 238 Query 384 GGCTCAAAACACTTCTCAGGAATCAGCATCGGATGAGTTAATTGAGGTATTCAGAGTGTT 443 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 239 GGCTCAAAACACTTCTCAGGAATCGGCATCGGATGAGTTAATAGAGGTATTCAGAGTGTT 298 Query 444 CGACAGAGACGGAGATGGTCTCATATCTCAACTTGAGTTGGGAGAAGGAATGAAGGACAT 503 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 299 CGACAGAGACGGAGATGGTCTCATATCTCCACTTGAGTTGGGAGAAGGAATGAAAGACAT 358 Query 504 GGGGATGAAGATAACAGCAGAAGAAGCGGAGCATATGGTCCGAGAAGCCGACCTTGATGG 563 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 359 GGGGATGAAGATAACAGCGGAAGAAGCGGAGCATATGGTCCGAGAAGCCGACCTCGATGG 418 Query 564 CGATGGTTTTCTTTCTTTCCACGAATTCTCTAAAATGATGATTGCTGCCTCTTATTAGCA 623 ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 419 CGATGGTCTTCTTTCATTCCACGAATTCTCTAAAATGATGATCGCTGCCTCTTATTAGCA 478 Query 624 TTTTGTGAAATGCCATGAT 642 || ||||||||||||||| Sbjct 479 TT--GTGAAATGCCATGAT 495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27867852327 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5