BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52180.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485582 jgi|Araly1|485582|fgenesh2_kg.5__1574__AT3G52180.1 1893 0.0
> Ahg485582 jgi|Araly1|485582|fgenesh2_kg.5__1574__AT3G52180.1
Length=1419
Score = 1893 bits (1025), Expect = 0.0
Identities = 1308/1434 (91%), Gaps = 62/1434 (4%)
Strand=Plus/Plus
Query 8 TTTTTGGACATGAATTG-AAAATTATTATAATTACCAGATTTTTTATCTATCGTCGAACT 66
||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
Sbjct 1 TTTTTGGACATGAATTGAAAAATTATTATAATTACCAGA-TTTTTATGTATCGTCG-A-- 56
Query 67 TGGGACTGAGAAAGTAGCAGCTTCGTTTGCTTCCTCTGATATTTTT-CTACACTCTCTGT 125
|| | |||||||||||||||||||||||||||| |||||
Sbjct 57 ----AC--------T---AGCTTCGTTTGCTTCCTCTGATATTTTTGCTACA-------- 93
Query 126 CTCTCTCTAA-AGATGAATTGTCTTCAGAATCTTCCCAGATGTTCAGTCTCACCTCTGCT 184
||||||| || | |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 94 CTCTCTC-AATA-ATGAATTGCCTTCAGAATCTTCCCAGATGTTTGGTCTCACCTCTGCT 151
Query 185 GGGATTCGGGTGCATTCAAAGAGATCAttcttcttcttcttcttcttTGAAGATGCTAAT 244
|||||| ||||||| ||| |||| | || ||||||||||||||||||||||||| |
Sbjct 152 GGGATTTGGGTGCAATCACAGAG---A-TC--CTTCTTCTTCTTCTTTGAAGATGCTGGT 205
Query 245 ATCGCCTCCGATCAAAGCCAATGATCCAAAATCTCGACTTGTTTTACATGCAGTATCAGA 304
||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 206 ATCACCTCCGATCAAAGCCAATGATCCAAAATCTCGACTTTTTTTACAGGCAGTATCAGA 265
Query 305 GTCAAAATCCAGCTCAGAGATGAGTGGTGTTGCAAAGGATGAAGAGAAATCTGATGAATA 364
|||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 266 GTCAAAGTCCAGCTCAGAGATGAGTGGTGTTTCAAAAGAGGAAGAGAAATCTGATGAATA 325
Query 365 TAGCCAAGACATGACTCAAGCTATGGGTGCTGTTCTAACTTACAGGCACGAGTTAGGAAT 424
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 326 TAGCCAAGACATGACTCAAGCTATGGGTGCTGTTTTAACTTACAGGCACGAGTTAGGAAT 385
Query 425 GAACTACAACTTTATTCGTCCAGATCTAATTGTTGGATCCTGCTTACAGACCCCTGAAGA 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 386 GAACTACAACTTTATTCGTCCAGATTTAATTGTTGGATCCTGCTTACAGACCCCTGAAGA 445
Query 485 TGTTGACAAGCTTCGTAAAATTGGAGTTAAAACCATATTTTGCTTGCAACAAGATCCAGA 544
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 446 TGTTGACAAGCTTCGTAAAATTGGGGTCAAAACTATATTTTGCTTGCAACAAGATCCAGA 505
Query 545 CCTGGAATATTTTGGAGTAGACATAAGCAGCATCCAAGCCTATGCTAAGAAATATAGTGA 604
| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 506 CTTGGAATATTTTGGAGTAGACATAAGAAGCATTCAAGCCTATGCTAAGAAATATAGTGA 565
Query 605 TATTCAGCATATTCGCTGTGAAATTAGAGACTTTGATGCATTTGATTTGAGAATGCGTCT 664
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 566 TATTCAGCATATTCGCTGTGAAATCAGAGACTTTGATGCATTTGATTTGAGAATGCGTCT 625
Query 665 TCCAGCCGTGGTTGGTACTCTTTACAAAGCTGTTAAGCGAAATGGAGGAGTTACATATGT 724
|||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 626 TCCAGCTGTGGTTAGTACACTTTACAAAGCTGTTAAGAGAAATGGAGGAGTTACATATGT 685
Query 725 GCACTGCACTGCTGGAATGGGAAGGGCTCCTGCTGTTGCGTTGACATACATGTTCTGGGT 784
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 686 GCACTGCACTGCTGGAATGGGAAGGGCTCCTGCTGTTGTGTTGACATACATGTTCTGGGT 745
Query 785 GCAAGGCTATAAGCTTATGGAAGCTCATAAATTACTTATGAGCAAAAGGTCGTGCTTTCC 844
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 746 GCAAGGCTATAAACTTATGGAAGCTCATAAATTACTTATGAGCAAAAGGTCATGTTTTCC 805
Query 845 GAAGCTGGATGCTATCAGAAATGCAACAATTGATATTCTTACAGGACTCAAGAGGAAGAC 904
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 806 GAAGCTGGATGCTATCAGAAATGCTACAATTGATATTCTTACAGGACTGAAGAAGAAGAC 865
Query 905 TGTTACTCTGACACTGAAAGATAAGGGGTTCTCCAGAGTAGAAATTTCTGGCCTTGACAT 964
||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 866 TGTTACTCTGACACTGAAAGACAAGGGATTCTCCTCAGTAGAAATTTCTGGCCTTGACAT 925
Query 965 TGGATGGGGACAGAGGATACCTCTAACACTGGACAAGGGAACAGGATTCTGGATCCTAAA 1024
|||||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||
Sbjct 926 TGGATGGGGACAGAGGATACCTTTAACACTGGACAAAGGAACAGGATTTTGGACCCTAAA 985
Query 1025 GAGAGAACTGCCTGAAGGACAGTTTGAATATAAATACATCATAGATGGTGAATGGACACA 1084
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 986 GAGAGAACTGCCTGAAGGGCAGTTTGAATATAAATACATCATAGATGGTGAATGGGCACA 1045
Query 1085 CAATGAGGCCGAACCGTTTATAGGACCTAACAAAGACGGCCATACCAACAATTACGCTAA 1144
||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 1046 CAATGAGGCTGAACCGTTTATAGGACCTAACAAAGATGGCCATACCAACAATTACACGAA 1105
Query 1145 AGTAGTGGACGATCCAACAAGTGTGGATGGTACAACTCGGGAGAGACTATCGAGCGAAGA 1204
||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1106 AGTAGTGGATGATCCAACGAGTGTGGATGGTGCAACTCGGGAGAGACTATCGAGCGAAGA 1165
Query 1205 CCCTGAGCTGTTGGAGGAAGAACGCTCGAAACTAATCCAGTTCTTGGAGACTTGTTCTGA 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 CCCTGAGCTGTTGGAGGAAGAACGCTCGAAACTAATCCAGTTCTTGGAGACTTGTTCTGA 1225
Query 1265 GGCAGA-AGTTTGAGAGTTGAGAGCATCCGACTAGACTATGTGAATGTACAACTTACTA- 1322
|||||| | ||||| |||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1226 GGCAGAGA-TTTGAAAGTTGAAAGCATT----TAGACAATGTGAATGTACAACTTACTAC 1280
Query 1323 --GTAACAA-----TAAAATGCTTCATGTTAGTAATACATACAG-TTACGCTTAT-A--G 1371
||||||| |||||||||||||||| ||||||||| || ||||| |||| | |
Sbjct 1281 TAGTAACAAGAAAATAAAATGCTTCATGTTGGTAATACATG-AGGTTACGTTTATTATAG 1339
Query 1372 CAGCAAAAGaaaaaaaCATGAAGTTAGTAGTACTATGTTCAAGTATAATATATA 1425
|||||| ||||| | |||||||||| ||||||||||| ||||| |||||||
Sbjct 1340 CAGCAA--GAAAATA---TGAAGTTAGTTGTACTATGTTCTAGTATTATATATA 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5