BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52190.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485583 jgi|Araly1|485583|fgenesh2_kg.5__1575__AT3G52190.1 2115 0.0
> Ahg485583 jgi|Araly1|485583|fgenesh2_kg.5__1575__AT3G52190.1
Length=1412
Score = 2115 bits (1145), Expect = 0.0
Identities = 1294/1363 (95%), Gaps = 21/1363 (2%)
Strand=Plus/Plus
Query 109 GATCCAAATT--AGGGAGAGACCAAAGAGGAAATTAA-TAACAATCAATCCAACAACGAA 165
|||||||||| || |||||||||||||||||||||| || |||||||| | |||||||
Sbjct 62 GATCCAAATTGGAGAGAGAGACCAAAGAGGAAATTAATTATCAATCAAT-C--CAACGAA 118
Query 166 TGGAGATTGAAGAAGCGAGTCGTGAAAGTGGACATGTTGTGTGCGGATCATGGATTCGTC 225
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGGCGATTGAAGAAGCGAGTCGTGAAAGTGGACATGTTGTGTGCGGATCATGGATTCGTC 178
Query 226 GCCCGAAGAAAGTAAACTGGGTTCTTATCGCTAAAGCTTCCAAACGCCGTGGCTCATCTG 285
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 GCCCAAAGAAAGTAAACTGGGTTCTTATCGCTAAAGCTTCTAAACGCCGTGGCTCATCTG 238
Query 286 TTTCTTCTCCTGCTCTCCTCAACATCTTCTCTTTTGACCCCATTACTGCTTCTCTTTCCT 345
|||||||||||||||||||||||||||||||||||||| || |||||||||| || ||||
Sbjct 239 TTTCTTCTCCTGCTCTCCTCAACATCTTCTCTTTTGACTCCGTTACTGCTTCCCTCTCCT 298
Query 346 CCTCTCCTTTGGCAACACACACGCTTAAGGATAGTGATGGTGATCCTGTGGCTGTTTCAG 405
||||||| ||||||||||| ||||| ||||| |||||||||||||||||| |||||||||
Sbjct 299 CCTCTCCCTTGGCAACACATACGCTAAAGGAGAGTGATGGTGATCCTGTGACTGTTTCAG 358
Query 406 TGCACCCTGGTGGGGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCAAGTTATTTG 465
|||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 359 TGCATCCTGGTGGAGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCAAGTCATTTG 418
Query 466 AGCTTGTCGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGAACTCCTTCCTCTCCAAA 525
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGATTGTTGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGAACTCCTTCCTCTCCAAA 478
Query 526 ATGCTGGACTACAAAAGTGTATGGCCTTCAGCTTTGATGGGTCTAAATTAGCTGTTGGGG 585
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 479 ATGCTGGACTACAAAAGTGTATGGCCTTCAGCTTTGATGGGTCTAAACTAGCTGTTGGTG 538
Query 586 GAGTGGATGGATGTCTTAGAATTATGGAGTGGCCAAACCTA-AGTGTAATTTTGGATGAG 644
|||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 539 GAGTGGATGGGTGTCTCAGAATTATGGAGTGGCCAAACCTACA-TGTAATTTTGGATGAG 597
Query 645 CCAAAGGCACACAAATCCATCCGGGACATGGATTTTAGTCTTGACTCAGAGTTCTTAGCT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CCAAAGGCACACAAATCCATCCGGGACATGGATTTTAGTCTTGACTCAGAGTTCTTAGCT 657
Query 705 ACAACATCAACTGATGGATCAGCTAGAATATGGAAAGCAGAAGATGGTTTTCCTTTGTCT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACAACATCAACTGATGGATCAGCTAGAATATGGAAAGCAGAAGATGGTTTTCCTTTGTCT 717
Query 765 ACTTTGGAACGTAGTGGGGATGAAAATATTGAACTGTGCCGTTTCTCTAAAGACGGAACA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 ACTTTGGAACGTAGTGGGGATGAAAATATTGAACTGTGCCGTTTCTCTAAAGATGGAACA 777
Query 825 AAACCTTTTTTGTTTTGTGCTGCTCAAAGAGGTGATACGCCTATGGTCAATGTTTATGAC 884
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 778 AAACCTTTTTTGTTTTGTGCTGCTCAAAAAGGTGATACGCCTGTGGTCAATGTTTATGAC 837
Query 885 ATTAGTACATGGAAGAAGCTTGGGTTCAAGAAGCTGTCAAGGAAGACTGCATCGACAATG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATTAGTACATGGAAGAAGCTTGGGTTCAAGAAGCTGTCAAGGAAGACTGCATCGACAATG 897
Query 945 GCAGTGAGCTTGGACGGGAAATATATTGCTTTGGGTGGGAAAGATGGAGATGTATCTGTT 1004
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCAGTGAGCTTGGATGGGAAATATATTGCTTTGGGTGGGAAAGATGGAGATGTATCTGTT 957
Query 1005 GCTGAAGTTAAGACAATGGAAATCTACCACTACAGTAAGAGGCTGCATCTTGGTCAATCC 1064
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 958 GCTGAAGTTAAGACAATGGAAATCTACCACTACAGTAAGAGGCTACATCTTGGTCAATCC 1017
Query 1065 ATTGCTTCACTTGAGTTCTGCCCCAGTGAAAGGGTTATGCTGACAACTTCTAGCGAATGG 1124
||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||
Sbjct 1018 ATTGCTTCACTTGAGTTCTGCCCTAGTGAAAGGGTTATACTGACAACTTCGAGTGAATGG 1077
Query 1125 GGAGAGATGGTGACCAAACTCACTGTACCAAAGGAGTGGAAAGAGTGGCAGATATATGCA 1184
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGTGAGATGGTGACCAAACTCAGTGTACCAAAGGAGTGGAAAGAGTGGCAGATATATGCA 1137
Query 1185 CTGCTGTTTTGCTTGTTCATGGCATCAGTGATAGCTGCATACGTATTCTTCGAGAACTCA 1244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1138 CTGCTGTTTTGCTTGTTCATGGCATCAGTGATAGCTGCATACGTTTTCTTCGAGAACTCA 1197
Query 1245 GATTCGTTTTGGAAGTTACCAATGGGAAAAGATCAAAAAAGACCAAAGATTAGTCTATTT 1304
|||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct 1198 GATTCGTTTTGGCAGTTACCAATGGGGAAAGATCAGAAAAGACCAAAGATAAGTCTTTTT 1257
Query 1305 GGAGGTTCCTCCTCCACGCCTTCTGAGGATCATAGTAGGTGGAACTTGGACCTATAGAAA 1364
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGAGGTTCCTCC---ACGCCTTCTGAGGATCATAGTAGGTGGAACTTGGACCTATAGAAA 1314
Query 1365 GATTATGTAACTTTCCTCTGCTTTTTCTT-CTT-T-CTTCCTTATCTTGTTGCAGCGttt 1421
| |||||||||||||||||||||||| || ||| | ||||| ||||||||||| ||||
Sbjct 1315 GTTTATGTAACTTTCCTCTGCTTTTTTTTTCTTCTTCTTCCAAATCTTGTTGCAATGTTT 1374
Query 1422 ttttttgtttttttCCTTTCTTCTGATTTTGCTCTGACAAATA 1464
|||||| |||||||||||||||||||||||| ||||
Sbjct 1375 TTTTTTC-------CCTTTCTTCTGATTTTGCTCTGACGAATA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5