BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52200.2
Length=2549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485584 jgi|Araly1|485584|fgenesh2_kg.5__1576__AT3G52200.1 3201 0.0
> Ahg485584 jgi|Araly1|485584|fgenesh2_kg.5__1576__AT3G52200.1
Length=2273
Score = 3201 bits (1733), Expect = 0.0
Identities = 1871/1937 (97%), Gaps = 12/1937 (1%)
Strand=Plus/Plus
Query 579 AGGACCCATATCACAGACGGTTCTTGCAATGCCAGCCTTGTCTCCTACTATGAGTCATGG 638
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 324 AGGACCCATATCACAGACGGTTCTTGCAATGCCAGCATTGTCTCCTACTATGAGTCATGG 383
Query 639 AAATGTTGTAAAATGGATGAAGAAAGAAGGTGACAAGGTAGAGGTGGGTGATGTACTATG 698
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 AAATGTTGTGAAATGGATGAAGAAAGAAGGTGACAAGGTAGAGGTGGGTGATGTACTATG 443
Query 699 TGAGATAGAGACAGACAAAGCCACTGTAGAATTTGAGAGTCAAGAGGAAGGATTTCTGGC 758
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TGAAATAGAGACAGACAAAGCCACTGTAGAATTTGAGAGTCAAGAGGAAGGATTTCTGGC 503
Query 759 CAAGATTTTAGTCACTGAAGGATCAAAGGATATCCCTGTTAATGAACCGATTGCAATAAT 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CAAGATTTTAGTCACTGAAGGATCAAAGGATATCCCTGTTAATGAACCGATTGCAATAAT 563
Query 819 GGTTGAGGAGGAAGACGACATTAAAAACGTTCCTGCTACCATAGAGGGTGGACGAGATGG 878
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 564 GGTTGAGGAGGAAGACGACATTCAAAACGTTCCTGCTACCATAGAGGGTGGACGAGTTGG 623
Query 879 TAAAGAGGAAACATCAGCTCATCAAGTGATGAAACCTGACGAAAGCACACAACAAAAAAG 938
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 624 TAAAGAGGAAACATCAGCTCAGCAAGAGATGAAACCTGACGAAAGCACACAACAAAAAGG 683
Query 939 TTCCATTCAGCCCGATGCATCAGATCTTCCCCCACATGTCGTCTTAGAAATGCCAGCACT 998
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TTCCATTCAGCCCGATACATCAGATCTTCCCCCACATGTCGTCTTAGAAATGCCAGCACT 743
Query 999 TTCTCCTACAATGAACCAAGGTAATATTGCCAAATGGTGGAAAAAAGAGGGTGACAAGAT 1058
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 744 TTCTCCTACAATGAACCAAGGTAACATTGCCAAATGGTGGAAAAAAGAGGGTGACAAGAT 803
Query 1059 TGAAGTGGGTGATGTCATAGGTGAGATCGAGACTGACAAAGCCACTCTGGAATTTGAAAG 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TGAAGTGGGTGATGTCATAGGTGAGATCGAGACTGACAAAGCCACTCTGGAATTTGAAAG 863
Query 1119 CCTTGAAGAGGGGTACTTAGCTAAGATTCTAATTCCTGAAGGTTCCAAGGATGTGGCGGT 1178
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 864 CCTTGAAGAGGGGTACTTGGCTAAAATTCTAATTCCTGAAGGTTCCAAGGATGTGGCGGT 923
Query 1179 GGGAAAGCCGATTGCCCTAATAGTTGAAGATGCTGAAAGTATTGAAGCCATCAAGTCTTC 1238
|||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 924 TGGAAAGCCAATTGCCCTTATAGTTGAAGATGCTGAAAGTATTGAAGTCATCAAGTCTTC 983
Query 1239 TTCCGCAGGTAGTTCTGAGGTTGATACAGTTAAAGAAGTCCCTGACAGTGTTGTAGATAA 1298
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 984 TTCCGCAGGTAGTTCTGAGGTTGAGACAGTTAAAGAAGTCCCTCACAGTGTTGTAGATAA 1043
Query 1299 ACCTACAGAGAGGAAAGCAGGCTTCACAAAGATCAGTCCTGCTGCAAAGCTATTGATTTT 1358
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1044 ACCTACAGGGAGGAAAGCAGGCTTCACAAAGATCAGTCCTGCTGCAAAACTATTGATTTT 1103
Query 1359 AGAACATGGATTGGAGGCATCATCAATTGAGGCATCGGGTCCCTATGGTACATTATTGAA 1418
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1104 AGGACATGGATTGGAGGCATCATCAATTGAGGCGTCGGGTCCCTATGGTACATTACTGAA 1163
Query 1419 ATCAGACGTTGTGGCCGCAATTGCTTCTGGAAAAGCTTCTAAATCATCTGCGTCTACGAA 1478
||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 1164 ATCAGACGTTGTGGCCGCAATTGCTTCTGGAAAAGTTTCTAAAACATCTGCTTCTACGAA 1223
Query 1479 GAAGAAGCAACCATCAAAGGAGACCCCGTCTAAATCCTCCTCCACATCGAAGCCTTCTGT 1538
|||||||||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||
Sbjct 1224 GAAGAAGCAACCGTCAAAGGAGACTCCGTCTAAATCCTCATCCACATCAAAGTCTTCTGT 1283
Query 1539 GACACAGTCAGATAATAATTATGAAGATTTTCCAAATAGTCAAATTCGCAAGATTATAGC 1598
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1284 GACACAGTCAG---ATAATTATGAAGATTTTCCCAATAGTCAAATTCGCAAGATTATAGC 1340
Query 1599 AAAACGTTTATTGGAATCAAAACAGAAGATACCCCATTTGTATTTACAATCAGATGTTGT 1658
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1341 AAAACGTTTATTGGAATCAAAACAGAAGACACCCCATTTGTATTTACAATCAGATGTTGT 1400
Query 1659 ATTGGATCCTCTTCTTGCATTTAGAAAAGAACTTCAAGAAAACCATGGCGTTAAAGTGTC 1718
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1401 ATTGGATCCTCTTCTTGCATTTAGAAAAGAACTTCAAGAAAGCCATGGCGTTAAAGTGTC 1460
Query 1719 TGTCAATGACATAGTTATTAAAGCAGTGGCAGTCGCACTGAGGAATGTACGACAAGCTAA 1778
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1461 TGTCAATGACATAGTTATTAAAGCAGTGGCAGTCGCACTGAGGAATGTACGGCAAGCTAA 1520
Query 1779 TGCTTTCTGGGATGCTGAGAAAGGAGATATCGTTATGTGTGACAGTGTTGACATATCAAT 1838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 TGCTTTCTGGGATGCTGAGAAAGGAGATATCGTTATGTGTGACAGTGTTGACATATCAAT 1580
Query 1839 TGCAGTTGCAACTGAGAAGGGCTTAATGACTCCAATTATCAAGAATGCAGACCAGAAATC 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 TGCAGTTGCAACTGAGAAGGGCTTAATGACTCCAATTATCAAGAATGCAGACCAGAAATC 1640
Query 1899 TATTTCTGCTATTTCCTTAGAGGTTAAGGAGCTGGCACAAAAGGCTCGATCTGGAAAGCT 1958
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1641 TATTTCTGCTATTTCCTTAGAGGTTAAGGAGCTGGCACAAAAGGCGCGTTCTGGAAAGCT 1700
Query 1959 TGCTCCTCATGAGTTTCAAGGAGGGACATTCAGCATATCAAATCTAGGAATGTATCCTGT 2018
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1701 TGCTCCTCATGAGTTTCAAGGAGGGACATTCAGCATATCAAATCTAGGGATGTATCCTGT 1760
Query 2019 GGATAATTTCTGCGCAATCATTAACCCCCCTCAGGCTGGGATTCTAGCAGTTGGTAGAGG 2078
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 GGACCATTTCTGCGCAATCATTAACCCCCCTCAGGCTGGGATTCTAGCAGTTGGTAGAGG 1820
Query 2079 AAACAAAGTGGTTGAGCCAGTTATTGGACTAGATGGAATTGAGAAGCCTTCTGTTGTGAC 2138
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1821 AAATAAAGTGGTTGAGCCAGTTATTGGACTAGATGGAATTGAGAAGCCTTCTGTTGTAAC 1880
Query 2139 AAAAATGAATGTAACGTTATCCGCTGATCATCGGATCTTTGATGGACAAGTTGGAGCTTC 2198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GAAAATGAATGTAACGTTATCCGCTGATCATCGGATCTTTGATGGACAAGTTGGAGCTTC 1940
Query 2199 GTTTATGTCTGAATTGCGTTCAAACTTTGAGGATGTTCGAAGACTTCTTCTGTGAGAAAG 2258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 GTTTATGTCTGAATTGCGTTCAAACTTTGAGGATGTTCGAAGACTTCTTCTGTGAGAAAG 2000
Query 2259 ATCCAACTGTTTACCAAATGAATCTTGGATTACTACATAATAAACCTCGGACCAACCCAC 2318
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 ATCCAAGTGTTTATCAAATGAATCTTGGATTACTACATAATAAACCTCGGACCAACCCAC 2060
Query 2319 GTGCACATCCAGAACCAGAA----CTGCTGGTCTACATTGTTAACTCTGATCACATGTTT 2374
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2061 GTGCACATCCAGAACCAGAAAGAACTGCTGGTCTACAGGGTTAACTCTGATCACATGTTT 2120
Query 2375 CAtttttttCCATTTGGTTCATA-TACTTACCAAAATTTGTTTTGGTCTTTAACAATTCG 2433
||||||||||||||||||||||| | || ||||||||||||||||||||| | ||||||
Sbjct 2121 CATTTTTTTCCATTTGGTTCATACT-CT-ACCAAAATTTGTTTTGGTCTT-AT-AATTCG 2176
Query 2434 TCTTATAGATTGGTAACTTCCTGAGGTATTTTTTGTCTGGTCTGTCCTCTGCAAAATAAA 2493
|||||||||||||||||||| ||||||||||||||| || |||||| || ||||||||||
Sbjct 2177 TCTTATAGATTGGTAACTTCATGAGGTATTTTTTGTTTGCTCTGTCTTCCGCAAAATAAA 2236
Query 2494 TAATTTCAGCTGTCAAT 2510
||| |||||||||||||
Sbjct 2237 TAAATTCAGCTGTCAAT 2253
Score = 473 bits (256), Expect = 2e-132
Identities = 305/327 (93%), Gaps = 9/327 (3%)
Strand=Plus/Plus
Query 33 AAAGTGTTACGATTCG--GT-ATCATCG--TCTCTCT--CATTTGTGATTTTGTCAAACC 85
|||||||||||||||| | ||||||| ||||||| ||||||||||||| |||||||
Sbjct 1 AAAGTGTTACGATTCGATATCATCATCGTCTCTCTCTCCCATTTGTGATTTTCTCAAACC 60
Query 86 CTGCTCTCTTTTCTCCAAGTGCTCTCATGGTGCTTCCGCTCTTCCGGCGCGCTGCGATCG 145
|| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CT-C-CTCTTTTCTCGAAGAGCTCTCATGGTGCTTCCGCTCTTCCGGCGCGCTGCGATCG 118
Query 146 CCCGGACTTCCTCGCTTCTCAGAGCTCGTCTTTTCGCTCCTGCCTCCGAATTCCATTCTC 205
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 119 CCCGGACTTCCTCGCTTCTCAGAGCTCGTCTTTTTGTTCCTGCCTCCGGATTCCATTCTC 178
Query 206 GCTTTTCTAATGGACTATACCACTTGGACGACAAAATTAGTAGCAGTAATGGTGTGAGGT 265
||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 179 GCTTTTCCAATGGACTATACCACTTGGACGACAAGATTCGTAGCAGTAATGGTGTGAGGT 238
Query 266 CTGCCTCTATAGACTTGATTACAAGAATGGATGATAGTTCTCCAAAGCCCATTCTGCGAT 325
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 239 CTGCCTCTATAGACATGATTACAAGAATGGATGATAGTCCTCCAAAGCCCATTTTGCGAT 298
Query 326 TTGGCGTGCAAAACTTTTCATCTACAG 352
|||||||||||||||||||||||||||
Sbjct 299 TTGGCGTGCAAAACTTTTCATCTACAG 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96101688135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5