BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G52220.1

Length=1026
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg898127 jgi|Araly1|898127|Al_scaffold_0005_2093                   1158    0.0  


> Ahg898127 jgi|Araly1|898127|Al_scaffold_0005_2093
Length=714

 Score = 1158 bits (627),  Expect = 0.0
 Identities = 685/714 (96%), Gaps = 0/714 (0%)
 Strand=Plus/Plus

Query  95   ATGTATCATCCAACGAGGGGAGGTGTTCGCGGTGGTCGAGATCAATTCAGTTGGGATGAA  154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTATCATCCAACGAGGGGAGGTGTTCGCGGTGGTCGAGATCAATTCAGTTGGGATGAA  60

Query  155  GTCAAGGCTGATAAATATAGGGAGAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGA  214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  61   GTCAAGGCTGATAAATATAGGGAGAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGT  120

Query  215  AGATGGCAAAAAGGTAAAGATCTTCATTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCC  274
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  121  AGATGGCAAAAAGGTAAAGATCTTCACTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCT  180

Query  275  GAGATGGATGCTATGAAAGAAGAGATTCAAAGAGTTAAGGAACAAGAGGAGCAGGCCATG  334
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  181  GAGATGGATGCTATGAAAGAGGAGATTCAAAGAGTTAAGGAACAAGAGGAACAGGCCATG  240

Query  335  AGGGAGGCTCTTGGCTTGGCACCAAAGTCCTCTACAAGGCCACAAGGAAATCGCCTTGAT  394
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  241  AGGGAGGCTCTTGGCTTGGCGCCAAAGTCCTCTACAAGACCACAAGGAAATCGCCTTGAT  300

Query  395  AAGCAAGAGTTTACTGAACTTGTGAAGAGGGGTTCGACAGCAGAGGACTTAGGTGCAGGG  454
            ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  301  AAGCAAGAGTTTACTGAACTTGTGAAGAGGGGTTCAACAGCAGAGGACTTGGGTGCAGGG  360

Query  455  AATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAAAGCACCACGACCTTGGGAA  514
            || |||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct  361  AACGCTGATGCTGTGTGGGTTCATGGCCTTGGCTATGCAAAAGCACCACGACCTTGGGAA  420

Query  515  GATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGATGCAGATTCAGCACGCTTACCAGCA  574
            ||||||||||||||||||||||||||||||||||| |||||  | ||||| || ||||||
Sbjct  421  GATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGACGCAGAGCCTGCACGTTTGCCAGCA  480

Query  575  GATACATCAGGGGTCAAAACTGTTGAAGATGGACCGGATGATGTTGAGAGGGACCAAAAG  634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GATACATCAGGGGTCAAAACTGTTGAAGATGGACCGGATGATGTTGAGAGGGACCAAAAG  540

Query  635  AAGGATAGGCGTGAGGAAAGGAAACCTGCAAAGAGAGAGAAGGAAGAAAGACATGATAGG  694
            |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  541  AAGGATAGGCATGAGGAAAGGAAACCTGCAAAGAGAGAGAAGGAAGAGAGACATGATAGG  600

Query  695  CGTGAAAAACGCGAAAGGCATGAGAAGCGAAGCGCTCGTGATTCAGATGATagaaagaag  754
            ||||| ||||| |||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct  601  CGTGACAAACGTGAAAGGCATGAGAAGCGACGCACTCGAGATTCAGATGATAGAAAGAAG  660

Query  755  cacaagaaagagaagaaggagaaaaaaagaagGCATGACTCTGATTCTGATTGA  808
            |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  661  CACAAGAAAGAGAAGAAGGAGAAAAAGAGGAGGCATGACTCTGATTCTGATTGA  714



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38161039917


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5