BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52220.1 Length=1026 Score E Sequences producing significant alignments: (Bits) Value Ahg898127 jgi|Araly1|898127|Al_scaffold_0005_2093 1158 0.0 > Ahg898127 jgi|Araly1|898127|Al_scaffold_0005_2093 Length=714 Score = 1158 bits (627), Expect = 0.0 Identities = 685/714 (96%), Gaps = 0/714 (0%) Strand=Plus/Plus Query 95 ATGTATCATCCAACGAGGGGAGGTGTTCGCGGTGGTCGAGATCAATTCAGTTGGGATGAA 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTATCATCCAACGAGGGGAGGTGTTCGCGGTGGTCGAGATCAATTCAGTTGGGATGAA 60 Query 155 GTCAAGGCTGATAAATATAGGGAGAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGA 214 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTCAAGGCTGATAAATATAGGGAGAACTATTTGGGTCACAGTATCAAAGCCCCTGTTGGT 120 Query 215 AGATGGCAAAAAGGTAAAGATCTTCATTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCC 274 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 121 AGATGGCAAAAAGGTAAAGATCTTCACTGGTATGCTAGAGATAAAAAGCAAAAGGGTTCT 180 Query 275 GAGATGGATGCTATGAAAGAAGAGATTCAAAGAGTTAAGGAACAAGAGGAGCAGGCCATG 334 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 181 GAGATGGATGCTATGAAAGAGGAGATTCAAAGAGTTAAGGAACAAGAGGAACAGGCCATG 240 Query 335 AGGGAGGCTCTTGGCTTGGCACCAAAGTCCTCTACAAGGCCACAAGGAAATCGCCTTGAT 394 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 241 AGGGAGGCTCTTGGCTTGGCGCCAAAGTCCTCTACAAGACCACAAGGAAATCGCCTTGAT 300 Query 395 AAGCAAGAGTTTACTGAACTTGTGAAGAGGGGTTCGACAGCAGAGGACTTAGGTGCAGGG 454 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 301 AAGCAAGAGTTTACTGAACTTGTGAAGAGGGGTTCAACAGCAGAGGACTTGGGTGCAGGG 360 Query 455 AATGCTGATGCTGTGTGGGTTCACGGTCTTGGATATGCTAAAGCACCACGACCTTGGGAA 514 || |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 361 AACGCTGATGCTGTGTGGGTTCATGGCCTTGGCTATGCAAAAGCACCACGACCTTGGGAA 420 Query 515 GATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGATGCAGATTCAGCACGCTTACCAGCA 574 ||||||||||||||||||||||||||||||||||| ||||| | ||||| || |||||| Sbjct 421 GATCCGAGCACCCTTGCATCCTCTCAGAAAGAAGACGCAGAGCCTGCACGTTTGCCAGCA 480 Query 575 GATACATCAGGGGTCAAAACTGTTGAAGATGGACCGGATGATGTTGAGAGGGACCAAAAG 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GATACATCAGGGGTCAAAACTGTTGAAGATGGACCGGATGATGTTGAGAGGGACCAAAAG 540 Query 635 AAGGATAGGCGTGAGGAAAGGAAACCTGCAAAGAGAGAGAAGGAAGAAAGACATGATAGG 694 |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 541 AAGGATAGGCATGAGGAAAGGAAACCTGCAAAGAGAGAGAAGGAAGAGAGACATGATAGG 600 Query 695 CGTGAAAAACGCGAAAGGCATGAGAAGCGAAGCGCTCGTGATTCAGATGATagaaagaag 754 ||||| ||||| |||||||||||||||||| || |||| ||||||||||||||||||||| Sbjct 601 CGTGACAAACGTGAAAGGCATGAGAAGCGACGCACTCGAGATTCAGATGATAGAAAGAAG 660 Query 755 cacaagaaagagaagaaggagaaaaaaagaagGCATGACTCTGATTCTGATTGA 808 |||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 661 CACAAGAAAGAGAAGAAGGAGAAAAAGAGGAGGCATGACTCTGATTCTGATTGA 714 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38161039917 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5