BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52370.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485604 jgi|Araly1|485604|fgenesh2_kg.5__1596__AT3G52370.1 2292 0.0
Ahg901436 jgi|Araly1|901436|Al_scaffold_0004_2086 1022 0.0
Ahg487448 jgi|Araly1|487448|fgenesh2_kg.6__582__AT5G06390.1 505 5e-142
> Ahg485604 jgi|Araly1|485604|fgenesh2_kg.5__1596__AT3G52370.1
Length=1428
Score = 2292 bits (1241), Expect = 0.0
Identities = 1375/1439 (96%), Gaps = 12/1439 (1%)
Strand=Plus/Plus
Query 5 AAATAAACTCAAAACCATTCTTCATTTCGCCGACACTTTCTTCTCCACCACCACCATGGA 64
||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1 AAAAAAACTCAAAACCATTCTTCATTTCACCGACACTTTCTTCT------CCACCATGGA 54
Query 65 TGATCTCTCCAAGCTTCTCTTCTTCCTCCTCCTCACTATCTCCATTACCACCGCATTACC 124
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 55 TGATCTCTCCAAGCTTCTCTTCTTCCTCCTCCTCACTA---CCATTACAACCGCATTACC 111
Query 125 CGATAAACCCGGGTCGGGTCAAATAAACTCAAACTCCGTCCTCGTTGCTCTTCTTGACTC 184
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 112 CGATAAACCCGGGTCGGGTCAAATAAACTCCAACTCTGTCCTCGTTGCTCTTCTTGACTC 171
Query 185 ACACTACACAGAACTAGCAGAGCTCGTCGAAAAAGCTCTTCTTCTCCAAACCTTAGAAGA 244
||||||||||||||||||||| || || || |||||||||||||||||||||||||||||
Sbjct 172 ACACTACACAGAACTAGCAGAACTTGTAGAGAAAGCTCTTCTTCTCCAAACCTTAGAAGA 231
Query 245 AGCTGTTGGTCAACACAACATCACAATCTTTGCTCCTCGTAACGATGCCTTAGaaaaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AGCTGTTGGTCAACACAACATCACAATCTTTGCTCCTCGTAACGATGCCTTAGAAAAAAA 291
Query 305 TCTTGATCCTGAATTCAAATCTTTCTTACTCCAACCGAAAAACCTCAAATCATTACAATC 364
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 292 TCTTGATCCTGAATTCAAATCTTTCTTGCTCCAACCAAAAAACCTCAAATCATTACAATC 351
Query 365 TTTATTAATGTTTCACATTCTTCCCAAAAGAATCACTTCTCCACAATTCTCCTCCGCCGT 424
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 352 TTTATTAATGTTTCACATTCTTCCCAAAAGAATCACTTCTCCTCAATTTTCCTCCGCCGT 411
Query 425 CGTTAGCCACCGTACTCTCTCCAACGACCACCTCCATTTCACCAACGGAAAAGTCAACTC 484
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 412 CGTTAGCCACCGTACTCTCTCCAACCACCACCTCCACTTCACCAACGGAAAAGTCAACTC 471
Query 485 CGCTGAAATAACCAAACCCGATGATTTAACTCGTCCCGATGGAATCATCCACGGAATCGA 544
|||||| || |||||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 472 CGCTGAGATTACCAAACCCGATGATTTAACCCGACCCGACGGAATCATCCATGGAATCGA 531
Query 545 ACGTCTTTTAATCCCACGTTCTGTTCAAGAAGATTTCAACCGCCGTCGTAGTCTCCGTTC 604
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 532 ACGTCTTTTAATCCCACGTTCTGTTCAAGAGGATTTCAACCGCCGTCGTAGTCTCCGTTC 591
Query 605 AATCGCTGCCGTATTACCGGAAGGAGCACCGGAGGTTGATCCAAGAACTCACCGTCTCAA 664
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AATCGCCGCCGTGTTACCGGAAGGAGCACCGGAGGTTGATCCAAGAACTCACCGTCTCAA 651
Query 665 GAAAAAGCCAGCACCAATTCCCGCCGGAGCTCCACCGGTTCTTCCGGTTTACGACGCAAT 724
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 652 GAAAATGCCAGCACCAATTCCCGCCGGAGCTCCACCGGTTCTCCCGGTTTACGACGCAAT 711
Query 725 GTCACCTGGTCCGTCACTAGCTCCGGCTCCGGCACCAGGACCGGGTGGGCCACGCCACCA 784
|||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 712 GTCACCCGGTCCGTCACTAGCTCCGGCTCCGGCACCGGGACCGGGTGGGCCTCGTCACCA 771
Query 785 TTTCAACGGAGAGGCTCAAGTTAAAGATTTTATCCACACGCTTCTTCATTACGGTGGCTA 844
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 772 TTTCAACGGAGAGGCTCAAGTTAAAGATTTCATCCACACGCTTCTTCATTACGGTGGCTA 831
Query 845 CAATGAAATGGCAGATATTCTCGTTAATCTCACTTCTTTAGCCACCGAGATGGGTCGGCT 904
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 832 CAATGAAATGGCAGACATTCTCGTTAATCTCACTTCTCTAGCCACAGAGATGGGTCGGCT 891
Query 905 CGTGTCGGAAGGTTACGTTTTAACCGTTTTAGCACCAAACGACGAAGCTATGGCTAAATT 964
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 892 CGTGTCGGAAGGTTACGTTTTAACCGTTTTAGCTCCAAACGACGAAGCTATGGCTAAGTT 951
Query 965 GACCACGGACCAATTGAGCGAACCGGGAGCTCCAGAGCAAATTATGTATTATCACATCAT 1024
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 952 GACCACGGACCAATTGAGCGAACCGGGAGCTCCAGAGCAAATTGTGTATTACCACATCAT 1011
Query 1025 ACCGGAATACCAAACCGAAGAGAGTATGTACAATTCTGTACGCCGGTTTGGGAAAATCCG 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1012 ACCGGAATACCAAACCGAAGAGAGTATGTACAATTCTGTACGCCGGTTTGGGAAAGTCCG 1071
Query 1085 GTACGATTCACTCCGGTTTCCTCATAAAGTAGAGGCTCAGGAGGCAGATGGTTCGGTTAA 1144
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GTATGATTCACTACGGTTTCCTCATAAAGTAGAGGCTCAGGAGGCAGATGGTTCGGTTAA 1131
Query 1145 GTTCGGTCATGGTGATGGTTCGGCTTATTTGTTCGATCCTGATATTTATACCGATGGACG 1204
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1132 GTTCGGTCATGGTGATGGTTCGGCTTATTTGTTCGATCCTGATATTTATACGGATGGACG 1191
Query 1205 GATTTCGGTTCAAGGGATTGACGGTGTTTTGTTCCCGGAGGAAAAAACTCCGGTCGAGAA 1264
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1192 GATTTCGGTTCAAGGGATTGACGGAGTTTTGTTTCCGGAGGAAAAAACTCCGGTCGAGAA 1251
Query 1265 GAAAACCGGCGTTCCAGTTGTCAAGAAAGCA-CCTAAACCAAGAAGAGGTAAATTGATGG 1323
|||||||| || |||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1252 GAAAACCGCCGCTCCAGTCGTCAAGAAAGCCGCC-AAACCAAGAAGAGGTAAATTGATGG 1310
Query 1324 AAGTAGCATGTACAATGCTGGGATCACAATTTCCAACATGTCAATGAGATCAAATTAAAT 1383
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1311 AAGTAGCATGTACAATGCTGGGATCACAATTTTCAACATGTCAATGAGATCAAATTAAAT 1370
Query 1384 CCGGGACATGAGAATTTTATAATTCTGTAAACATGTGATAAAAATGTGAACAGAAAAAA 1442
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1371 CCAG-ACATGAGAATTTTATAATTCTGTAAACATGTGATAAAATTGTGAACAGAACAAA 1428
> Ahg901436 jgi|Araly1|901436|Al_scaffold_0004_2086
Length=1338
Score = 1022 bits (553), Expect = 0.0
Identities = 1066/1310 (81%), Gaps = 50/1310 (4%)
Strand=Plus/Plus
Query 75 AAGCTTCTCTTCTTCCTCCTCCTCACTATCTCCATTACCACCGCATTACCCGAT---AAA 131
||||| ||| || ||||||||||||| | ||||||| ||||||||||||||||| |||
Sbjct 25 AAGCTCCTCCTCCTCCTCCTCCTCACCACCTCCATTGCCACCGCATTACCCGATAACAAA 84
Query 132 CCCGGGTCGGGTCAAATAAACTCAAACTCCGTCCTCGTTGCTCTTCTTGACTCACACTAC 191
|||| |||||||||||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct 85 CCCGTACCGGGTCAAATAAACTCAAACTCAGTCCTCGTAGCTCTCCTTGACTCTCACTAC 144
Query 192 ACAGAACTAGCAGAGCTCGTCGAAAAAGCTCTTCTTCTCCAAACCTTAGAAGAAGCTGTT 251
||||| ||||| || || ||||| ||||| || |||||||||||| | |||||||| |||
Sbjct 145 ACAGAGCTAGCTGAACTAGTCGAGAAAGCCCTCCTTCTCCAAACCCTCGAAGAAGCAGTT 204
Query 252 GGTCAACACAACATCACAATCTTTGCTCCTCGTAACGATGCCTTAGaaaaaaaTCTT-GA 310
||| |||||||||||||||||||||| || || ||||||||||||||| ||| ||| ||
Sbjct 205 GGTAAACACAACATCACAATCTTTGCACCACGCAACGATGCCTTAGAACGAAA-CTTAGA 263
Query 311 TCCTGAATTCAAATCTTTCTTACTCCAACCGAA-AAACCTCAAATCAT-TACAATCTTTA 368
|| |||||||||||||| || |||| || |||||||||||| | |||||||||||
Sbjct 264 CCCACTCTTCAAATCTTTCTTGCTTGAACC-AAGAAACCTCAAATC-TCTACAATCTTTA 321
Query 369 TTAATGTTTCACATTCTTCCCAAAAGAATCACTTCTCCACAATTCTCCTCCGCCGTCGTT 428
||||||||||||||||| || ||| ||||| ||||||| ||| | ||| | | || |
Sbjct 322 TTAATGTTTCACATTCTACCTAAACGAATCTCTTCTCCTCAA-TGGCCTTCTCTTTC-TC 379
Query 429 A--GCCACCGTACTCTCTCCAACGACCACCTCCA--T----TTC-AC--C-A-AC-GGAA 474
| |||||||||||||||||||||||| ||||| | || || | | || ||
Sbjct 380 ACCACCACCGTACTCTCTCCAACGACCATCTCCACCTCACCGTCGACGTCAACACTTTAA 439
Query 475 AAGTCA-ACTCCGCTGA-AATAACCAAACCCGATGATTTAACTCGTCCCGATGGAATCAT 532
|||| | | |||||||| | || || ||||||||| | | | | |||||||| |||||
Sbjct 440 AAGT-AGATTCCGCTGAGATTATCC-GACCCGATGACGTCATTAGACCCGATGGTATCAT 497
Query 533 CCACGGAATCGAACGTCTTTTAATCCCACGTTCTGTTCAAGAAGATTTCAACCGCCGTCG 592
||||| |||||||||||| | ||||| || |||||||| ||||||||||||||||||||
Sbjct 498 TCACGGCATCGAACGTCTTCTCATCCCCCGCTCTGTTCAGGAAGATTTCAACCGCCGTCG 557
Query 593 TAGTCTCCGTTCAATCGCTGCCGT-ATTACCGGAAGGAGCACCGGAGGTTGATCCAAGAA 651
||||||||| |||||| | ||||| || ||| |||||||| || || ||||| |||||||
Sbjct 558 TAGTCTCCGCTCAATCTCCGCCGTTAT-ACCAGAAGGAGCTCCTGAAGTTGACCCAAGAA 616
Query 652 CTCACCGTCTCAAGAAAA-AGCCAGCACCAATTCCCGCCGGAGCTCCACCGGTTCTTCCG 710
||||||||||||||||| |||| | || | ||||||||||||||||||||||||||
Sbjct 617 CTCACCGTCTCAAGAAACCAGCCCCCGCCG-TCCCCGCCGGAGCTCCACCGGTTCTTCCA 675
Query 711 GTTTACGACGCAATGTCACCTGGTCCGTCACTAGCTCCGGCTCCGGCACCAGGACCGGGT 770
| |||||||| |||||||| ||||| || ||||| |||||||| || || ||||| |||
Sbjct 676 ATCTACGACGCTATGTCACCAGGTCCTTCCCTAGCCCCGGCTCCAGCTCCCGGACCTGGT 735
Query 771 GGGCCACGCCACCATTTCAACGGAGAGGCTCAAGTTAAAGATTTTATCCACACGCTTCTT 830
|| ||||| |||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 736 GGTCCACGTGGCCATTTCAACGGCGAGGCTCAAGTTAAAGATTTCATCCACACTCT-CTT 794
Query 831 -CATTACGGTGGCTACAATGAAATGGCAGATATTCTCGTTAATCTCACTTCTTTAGCCAC 889
||||||||||||||||| || ||||| ||||| ||||| ||| | || |||||||||||
Sbjct 795 GCATTACGGTGGCTACAACGAGATGGCTGATATACTCGTCAATTTAACATCTTTAGCCAC 854
Query 890 CGAGATGGGTCGGCTCGTGTCGGAAGGTTACGTTTTAACCGTTTTAGCACCAAACGACGA 949
||||||||||| || || || ||||| ||||||||||||||| |||| || ||||||||
Sbjct 855 TGAGATGGGTCGTCTTGTCTCTGAAGGCTACGTTTTAACCGTTCTAGCTCCTAACGACGA 914
Query 950 AGCTATGGCTAAATTGACCACGGACCAA-TTGAGCGAACCGGGAGCTCCAGAGCAAATTA 1008
||| |||||||| | || |||||||| || ||||| || || ||||| || || ||||
Sbjct 915 AGCCATGGCTAAGCTCACAACGGACCAGCTT-AGCGAGCCAGGTGCTCCTGAACAGATTA 973
Query 1009 TGTATTATCACATCATACCGGAATACCAAACCGAAGAGAGTATGTACAATTCTGTACGCC 1068
||||||| |||||||||||||| || ||||| || |||||||||||||| |||| ||
Sbjct 974 TGTATTACCACATCATACCGGAGTATCAAACAGAGGAGAGTATGTACAACGCTGTTCGGA 1033
Query 1069 GGTTTGGGAAAATCCGGTACGATTCACTCCGGTTTCCTCATAAAGTAG--AGGCTCAGGA 1126
| ||||||||| | ||||||||| | ||||||| || ||||| | || |||| ||
Sbjct 1034 GATTTGGGAAAGTGAAGTACGATTCTTTGAGGTTTCCACACAAAGT-GTTAG-CTCAAGA 1091
Query 1127 GGCAGATGGTTCGGTTAAGTTCGGTCATGGTGATGGTTCGGCTTATTTGTTCGATCCTGA 1186
|| ||||| || || || ||||| || |||||||| || ||||| || || ||||||||
Sbjct 1092 AGCTGATGGATCTGTCAAATTCGGACACGGTGATGGCTCAGCTTACTTATTTGATCCTGA 1151
Query 1187 TATTTATACCGATGGACGGATTTCGGTTCAAGGG-ATTGACGGTGTTTTGTTCCCGG-AG 1244
|||||| ||||| || |||||||| ||||| ||| |||||||| || |||||||||| ||
Sbjct 1152 TATTTACACCGACGGTCGGATTTCAGTTCA-GGGTATTGACGGAGTCTTGTTCCCGGCAG 1210
Query 1245 GAAAAAACTCCGGTCGAGA-AGA--AAACCGGCGT-TCCAGTTGTCAAGAAAGCACCTAA 1300
| |||| || | ||| | ||| ||||| ||| ||| || || ||||||| ||||
Sbjct 1211 -AGGAAACGCCAG-CGACAGAGATTAAACCCGCGGCTCCGGTCGTTAAGAAAGTTGCTAA 1268
Query 1301 ACCAAGAAGAGGTAAATTGATGGAAGTAGCATGTACAATGCTGGGATCAC 1350
| |||||||||||||||||||||| ||||| |||| |||| |||| ||||
Sbjct 1269 ATCAAGAAGAGGTAAATTGATGGAGGTAGCTTGTAGAATGATGGGTTCAC 1318
> Ahg487448 jgi|Araly1|487448|fgenesh2_kg.6__582__AT5G06390.1
Length=1921
Score = 505 bits (273), Expect = 5e-142
Identities = 595/751 (79%), Gaps = 20/751 (3%)
Strand=Plus/Plus
Query 500 ACCCGATGATTTAACTCGTCCCGATGGAATCATCCACGGAATCGAACGTCTTTTAATCCC 559
|||||||||||| || || ||||| ||| | |||||||| |||||||| ||| | || ||
Sbjct 582 ACCCGATGATTTGACCCGACCCGACGGATTGATCCACGGGATCGAACGGCTTCTCATTCC 641
Query 560 ACGTTCTGTTCAAGAAGATTTCAACCGCCGTCGTAGTCTCC-GTTCAATCGCTGCCGTAT 618
|| || ||||||||||||||||| || |||||||| |||| | |||||| | ||||| |
Sbjct 642 TCGCTCCGTTCAAGAAGATTTCAATCGTCGTCGTAGCCTCCAG-TCAATCACCGCCGTTT 700
Query 619 TACCGGAAGGAGCACCGGAGGTTGATCCAAGAACTC-ACCGTCTCAAGAAA-AAGCCAGC 676
|||| |||||||| || || ||||| || ||||| | ||||||| |||||| | ||||
Sbjct 701 TACCCGAAGGAGCTCCTGAAGTTGACCCGAGAAC-CAACCGTCTTAAGAAACCTG-CAGC 758
Query 677 ACCAATTCCCGCCGGAGCTCCACCGGTTCTTCCGGTTTACGACGCAATGTCACCTGGTCC 736
||| | ||||||||| ||||||||| ||||||| | | ||| ||| | ||||||||
Sbjct 759 TCCAGTCCCCGCCGGATCTCCACCGGCTCTTCCGATCCAATCCGCCATGGCTCCTGGTCC 818
Query 737 GTCACTAGCTCCGGCTCCGGCACCAGGACCGGGTGGGCCACGC--CACCATTTCAACGGA 794
|| ||||||||||| || || || ||||| || || || || ||||| ||| ||||
Sbjct 819 ATCGCTAGCTCCGGCACCAGCTCCGGGACCTGG-AGG-CAAGCAGCACCACTTCGACGGT 876
Query 795 GAGGCTCAAGTTAAAGATTTTATCCACACGCTTCTT-CATTACGGTGGCTACAATGAAAT 853
|| |||||||| |||||||| |||||||| | | || |||||||| || ||||| || ||
Sbjct 877 GAAGCTCAAGTCAAAGATTTCATCCACACAC-TGTTACATTACGGCGGTTACAACGAGAT 935
Query 854 GGCAGATATTCTCGTTAATCTCACTTCTTTAGCCACCGAGATGGGTCGGC-TCGTGTCGG 912
||| || |||||||| ||||| || || | || || |||||||||| || | ||||| |
Sbjct 936 GGCGGACATTCTCGTGAATCTGACGTCACTCGCGACGGAGATGGGTC-GCTTGGTGTCAG 994
Query 913 AAGGTTACGTTTTAACCGTT-TTAGCACCAAACGACGAAGCTATGGCTAAATTGACCACG 971
|||| || || || || ||| || || || |||||||| |||||||| ||| |||| |||
Sbjct 995 AAGGCTATGTGTTGACGGTTCTT-GCTCCTAACGACGACGCTATGGCGAAACTGACGACG 1053
Query 972 GACCAATTGAGCGAACCGGGAGCTCCAGAGCAAATTATGTATTATCACATCATACCGGAA 1031
|| || ||||| || || ||||| || ||||| ||| ||||||| || || || || ||
Sbjct 1054 GATCAGTTGAGTGAGCCAGGAGCACCGGAGCAGATTGTGTATTACCATATTATCCCTGAG 1113
Query 1032 TACCAAACCGAAGAGAGTATGTACAATTCTG-TACGCCGGTTTGGGAAAATCCGGTACGA 1090
|| ||||| || ||||||||||||||||||| || | | |||||||| | || ||
Sbjct 1114 TATCAAACGGAGGAGAGTATGTACAATTCTGTTA-GGAGATTTGGGAAGGTGAAGTTTGA 1172
Query 1091 TTCACTCCGGTTTCCTCATAAAGTAGAGGCTCAGGAGGCAGATGGTTCGGTTAAGTTCGG 1150
| | || || ||||||||||| || | |||| |||| || || |||||||||||||| ||
Sbjct 1173 TACGCTGCGCTTTCCTCATAAGGTTGCGGCTAAGGAAGCTGACGGTTCGGTTAAGTTTGG 1232
Query 1151 TCATGGTG-ATGGTTCGGCTTATTTGTTCGATCCTGATATTTATACCGATGGACGGATTT 1209
| | |||| | | || || |||||||||||||||||||||||||||||||| || ||||
Sbjct 1233 TGACGGTGAAAAG-TCAGCGTATTTGTTCGATCCTGATATTTATACCGATGGTCGAATTT 1291
Query 1210 CGGTTCAAGGGATTGACGGTGTTTTGTTCCC 1240
|||||||||||||||| ||||||||||||||
Sbjct 1292 CGGTTCAAGGGATTGATGGTGTTTTGTTCCC 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5