BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52380.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938119 jgi|Araly1|938119|scaffold_502310.1 1476 0.0
Ahg485607 jgi|Araly1|485607|fgenesh2_kg.5__1599__AT3G52390.2 122 5e-27
> Ahg938119 jgi|Araly1|938119|scaffold_502310.1
Length=1035
Score = 1476 bits (799), Expect = 0.0
Identities = 961/1038 (93%), Gaps = 16/1038 (2%)
Strand=Plus/Plus
Query 204 CACAAACCTC-TTTAGAAAAATGTCGTCAGCTTATTGTTCCTCCGCCGTGGCTGTATCCG 262
|||||||| | ||| | |||||||||||||| | ||||||||| |||||||| |||||||
Sbjct 4 CACAAACC-CGTTTTGTAAAATGTCGTCAGCATCTTGTTCCTCTGCCGTGGCGGTATCCG 62
Query 263 CCGCAGCCACCGCTTCCTCCGCCGCTACCTTTAATCCATTACTCTCCTCCCACTCCAA-T 321
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 63 CCGCAGCCACCGCTTCCTCCGCCGCTACCTTTAGTCCATTACTCTTTTCCCACTCCAACT 122
Query 322 TCCCAACTCTTCTATCGCTTTACACCAAAATCCTTCAAACTCGTTGCCAATTGCCCTAAT 381
| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 123 T-CCGGCTCTTCTATCGCTTCACACCAAAATCCTTCAAACTCGTTGCCAATTGCCCTAAT 181
Query 382 CCACTAATCCTCCACTCAAATATCCGCCGCCACCGCTTCTTCTGCGCCGCCGAAACCGAA 441
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 182 CCACTTATCCTCCATTCAAATATCCGTCGCCACCGCTTCTTCTGCGCCGCCGAAACCGAA 241
Query 442 GCTAGTTCCGCCGATGATGAAATCCAGGCATCAGTagaagaagaagaagaggtagaagaa 501
|||| ||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 242 GCTACTTCTGCCGATGAAGAAATCCAGGCATCACTAGAAGAAGAAGAAGAAGTAGAAGAA 301
Query 502 gaaggagatgaag--gt-gaagaagaagta-g-aggaagaaAAACAGACGACGCAAGCGA 556
|||| ||| |||| || || ||||||| | | | || ||||||||||| || |||||||
Sbjct 302 GAAGAAGAAGAAGAAGTAGAGGAAGAAG-ACGCA-GATGAAAAACAGACTACACAAGCGA 359
Query 557 GTGGTGAAGAAGGGAGGCTTTACGTTGGGAATTTACCTTACACAATCACTTCTTCTGAGC 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTGGTGAAGAAGGGAGGCTTTACGTTGGGAATTTACCTTACACAATCACTTCTTCTGAGC 419
Query 617 TCTCTCAGATTTTTGGAGAAGCTGG-AACTGTCGTCGATGTTCAGATTGTTTATGATAAA 675
|||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 420 TCTCTCAGCTTTTTGGAGAAGCTGGCAA-TGTCGTCGATGTTCAGATTGTTTATGATAAA 478
Query 676 GTTACTGATAGAAGCAGAGGATTTGGATTTGTAACAATGGGAAGCATTGAAGAAGCTAAA 735
|| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 479 GTCACTGATAGAAGCAGAGGATTTGGATTTGTAACCATGGGAACCATCGAAGAAGCTAAG 538
Query 736 GAAGCGATGCAGATGTTTAACAGCTCTCAAATTGGTGGTAGAACGGTGAAAGTGAACTTC 795
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 539 GAAGCGATTCAGATGTTTAACAGCTCTCAAATTGGTGGTAGAACTGTGAAAGTGAACTTC 598
Query 796 CCGGAGGTGCCGAGAGGCGGTGAGA-ACGAAGTAATGAGAACCAAAATCCGTGATAATAA 854
|||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |||
Sbjct 599 CCGGAGGTGCCGAGAGGCGGAGAGAGA-GAAGTAATGAGAACCAAAATCCGTGATACTAA 657
Query 855 CCGGAGTTATGTTGATAGTCCTCATAAGGTATATGCAGGAAACCTTGGTTGGAATCTAAC 914
||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 658 CCGAAGTTATGTCGATAGTCCTCATAAGATTTATGCAGGAAACCTTGGTTGGAATCTAAC 717
Query 915 CTCACAAGGTTTAAAGGATGCATTTGGTGATCAACCTGGTGTGCTTGGTGCTAAAGTTAT 974
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCCCAAGGTTTAAAAGATGCATTTGGTGATCAACCTGGTGTGCTTGGTGCTAAAGTTAT 777
Query 975 CTATGAAAGAAATACTGGGAGGTCTAGGGGGTTTGGTTTCATCTCGTTCGAGTCAGCGGA 1034
|||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 778 CTATGAAAGAAACACTGGGAGGTCTCGGGGATTTGGTTTCATCTCGTTCGAGTCAGCGGA 837
Query 1035 AAATGTTCAGTCTGCTTTGGCTACAATGAATGGCGTGGAAGTTGAAGGACGAGCGCTGAG 1094
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 838 AGATGTTCAGTCTGCTTTGGCTACCATGAATGGCGTGGAAGTTGAAGGACGAGCGCTGAG 897
Query 1095 GCTAAATTTGGCTTCAGAGAGAGAGAAACCCACTGTGTCTCCTCCTTCCGTAGAAGAAGG 1154
|||||||||||||||||||||||||||| |||| || |||||||| || |||||||||||
Sbjct 898 GCTAAATTTGGCTTCAGAGAGAGAGAAAGCCACCGTATCTCCTCCATCTGTAGAAGAAGG 957
Query 1155 AGAAACCGAGGAGGCCAGTCTAGAGAGTAACGAGGTGCTTTCGAATGTTAGTGCATGAAG 1214
||||||| | ||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 958 AGAAACCAAAGAGGCCAGTCTAGAGAGTAGTGAGGTGCTTTCGAACGTTAGTACATGAAG 1017
Query 1215 CA-GCAAAAGCACAATAG 1231
| |||| ||||||||||
Sbjct 1018 AAAGCAATAGCACAATAG 1035
> Ahg485607 jgi|Araly1|485607|fgenesh2_kg.5__1599__AT3G52390.2
Length=1147
Score = 122 bits (66), Expect = 5e-27
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand=Plus/Minus
Query 1345 GATAGAAAACAAGAGATTGTTTGTAATTTTTATTGAGAATGTTTTTAATCCATAAATGGT 1404
||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1147 GATAGAAAACACGAGATTGTTTGTAATTTTTATTGAGAATGCTTTTAATCCAAAAATGGT 1088
Query 1405 GTAATGTAACAACATATCTTGATTCC 1430
||||||||||| ||||||||||||
Sbjct 1087 GTAATGTAACA---TATCTTGATTCC 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5