BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52500.1 Length=1888 Score E Sequences producing significant alignments: (Bits) Value Ahg485617 jgi|Araly1|485617|fgenesh2_kg.5__1609__AT3G52500.1 2283 0.0 > Ahg485617 jgi|Araly1|485617|fgenesh2_kg.5__1609__AT3G52500.1 Length=1659 Score = 2283 bits (1236), Expect = 0.0 Identities = 1450/1555 (93%), Gaps = 7/1555 (0%) Strand=Plus/Plus Query 212 TAA-AAGGAAGAAGAAAGTCACAGAGATCGAACATGAttctccactttccacttctttgt 270 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 TAATAATGAAGAAGAAAGTCACAGAGATCGAACATGATTCTCCACTTTCCACTTCTTTGT 167 Query 271 cttctttcttctccttctcacttacttAACCCATAAGCCATCAATCCCAAACACACCATT 330 ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct 168 CTTCTTTCTTCTCCTTCTCACTTACTTAAGCCATAAGCCATCAAACCCAAAAACACCACA 227 Query 331 ACAATGGcttcttctatcttcttcttcttccttatcttcctctccgtcgtctccgccgtc 390 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 ACTATGGCTTCTTCTTTCTTCTTCTTCTTCCTTATCTTCCTCTCCGTCGTCTCCGCCGTC 287 Query 391 aaactacctctctctcccttctcCCACTCCGACCAATCACCAAAAGACCCTTACCTCTCT 450 ||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 288 AAATTACCTCTTTCTCCCTTCTCCCACTCCGACCAATCACCTAAAGATCCTTACCTCTCT 347 Query 451 CTCCGTCGTCTCGCTGAATCCTCAATCGCTAGAGCTCATAAACTCAAACACGGCACCTCA 510 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 348 CTCCGTCGTCTCGCTGAATCCTCAATCGCCAGAGCTCATAAACTCAAACACGGCACTTCC 407 Query 511 ATAAAACCCGACGAAGATGCTCTCTCCTCCACCA-CCACCGCATCCGCCACCGTCGTGAA 569 || |||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||| Sbjct 408 ATCAAACCCGACGAAGAAGCTCTCTCCTCCAC-AGCCACCACATCCGCCACCGTCGTGAA 466 Query 570 ATCTCCTCTCTCTGCTAAAAGCTACGGCGGATACTCAGTCTCTCTCAGCTTCGGCACACC 629 ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 467 ATCTCCTCTTTCACCTAAAAGCTACGGTGGATACTCAGTCTCTCTCAGCTTCGGCACACC 526 Query 630 GTCGCAAACAATCCCATTCGTTTTCGATACCGGAAGCAGTCTCGTTTGGCTACCTTGTAC 689 ||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||| Sbjct 527 GTCGCAAACAATCCCATTCGTTTTCGATACCGGAAGCAGTCTCGTCTGGTTCCCATGTAC 586 Query 690 CTCAAGATATCTCTGCTCCGGTTGCGATTTCTCCGGTTTGGATCCGACTCTAATCCCTAG 749 ||| |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| Sbjct 587 CTCGAGATATCTCTGCTCCGATTGCAATTTCTCCGGTTTGGATCCGACTCAAATCCCTAG 646 Query 750 ATTTATCCCCAAGAACTCTTCCTCTTCGAAGATTATCGGGTGTCAGAGTCCAAAATGTCA 809 ||||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||| Sbjct 647 ATTTATCCCCAAGAACTCTTCCTCTTCCCGGGTTATCGGGTGTCAGAATCCGAAATGTCA 706 Query 810 GTTTCTATACGGACCCAATGTTCAATGCAGAGGATGTGACCCGAATACCCGAAACTGCAC 869 |||||||| |||| ||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 707 GTTTCTATTCGGAGCCAATGTCCAATGCAGAGGATGTGACCCGAATACCCGAAATTGCAC 766 Query 870 CGTCGGTTGTCCACCGTACATTCTTCAATACGGATTAGGATCAACGGCTGGGGTTTTAAT 929 |||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| | Sbjct 767 CGTCTCTTGTCCACCGTACATTCTTCAATACGGATTAGGATCGACGGCTGGGATTTTATT 826 Query 930 AACCGAAAAGCTTGATTTCCCGGATCTAACCGTACCCGATTTCGTAGTCGGATGTTCAAT 989 | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 827 ATCCGAAAAGCTTGATTTCCCGGATCTAACAGTACCCGATTTCGTTGTCGGATGTTCAAT 886 Query 990 TATCTCCACCCGACAACCCGCTGGTATCGCTGGGTTTGGGCGAGGACCCGTATCGCTTCC 1049 ||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||| Sbjct 887 TATCTCCACCCGAAAACCCGCTGGTATCGCCGGGTTTGGGCGAGGATCCGAATCGCTTCC 946 Query 1050 TTCACAAATGAATCTCAAGAGATTCTCTCACTGTTTGGTTTCTCGTCGGTTTGACGATAC 1109 |||||||||||| || |||| ||| |||||||||||||||||||||||||| |||||||| Sbjct 947 TTCACAAATGAAGCTTAAGAAATTTTCTCACTGTTTGGTTTCTCGTCGGTTCGACGATAC 1006 Query 1110 CAACGTAACCACCGATCTTGATTTAGATACCGGATCGGGTCATAATTCCGGGTCTAAAAC 1169 |||||| || ||||||||||||||||||||||| ||||||||||| ||||| || ||||| Sbjct 1007 CAACGTCACTACCGATCTTGATTTAGATACCGGGTCGGGTCATAAATCCGGTTCGAAAAC 1066 Query 1170 TCCGGGTCTCACATACACGCCGTTTCGGAAAAATCCCAATGTCTCCAACAAAGCTTTTCT 1229 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1067 TCCGGGTCTCACCTACACGCCGTTTCGGAAAAATCCCAATGTCTCCAACACAGCTTTTCT 1126 Query 1230 CGAGTATTATTACCTCAATCTCCGGCGAATCTACGTCGGAAGAAAGCACGTGAAGATTCC 1289 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1127 CCAGTATTATTACCTCAATCTCCGGCGAATCTACGTCGGAAGCAAGCACGTGAAGATTCC 1186 Query 1290 GTATAAGTATCTCGCGCCGGGAACTAACGGAGACGGAGGATCCATTGTTGATTCCGGATC 1349 ||| |||| |||||| ||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1187 GTACAAGTTTCTCGCTCCGGGAACTAACGGAAACGGAGGATCCATCGTTGATTCCGGATC 1246 Query 1350 TACATTCACTTTCATGGAGCGACCCGTTTTCGAGCTCGTTGCTGAAGAATTCGCTTCACA 1409 ||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 1247 TACATTCACATTCATGGAGCGACCCGTTTTCGAGCTAGTAGCTGAAGAATTCGCGACACA 1306 Query 1410 GATGTCGAACTACACTCGTGAGAAAGACTTGGAGAAGGAAA-CAGGACTTGGACCGTGTT 1468 ||||||||| |||||||||||||||||||| |||||| | | ||| ||| |||||||| Sbjct 1307 GATGTCGAATTACACTCGTGAGAAAGACTTAGAGAAG-ATCTCCGGAATTGCACCGTGTT 1365 Query 1469 TTAATATCTCCGGGAAGGGAGATGTGACGGTGCCGGAGCTGATTTTTGAGTTTAAAGGTG 1528 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1366 TTAATATCTCCGGCAAGGGAGATGTGACGGTGCCGGAGCTGATTTTTGAGTTTAAAGGTG 1425 Query 1529 GAGCGAAGTTGGAATTGCCGTTATCCAATTACTTCACGTTCGTTGGGAATACTGATACCG 1588 ||||||| |||||||||||||||| ||||||||| |||||||||||||| ||||||| | Sbjct 1426 GAGCGAAAATGGAATTGCCGTTATCGAATTACTTCTCGTTCGTTGGGAATGCTGATACTG 1485 Query 1589 TTTGTCTTACGGTGGTTTCGGATAAAACCGTTAATCCCTCCGGCGGGACTGGACCGGCGA 1648 ||||||| ||||||||||| ||||| |||||||||||| |||||||||||| ||||||| Sbjct 1486 TTTGTCTCACGGTGGTTTCCGATAACACCGTTAATCCCGGCGGCGGGACTGGTCCGGCGA 1545 Query 1649 TAATTCTGGGGAGTTTCCAGCAACAGAACTATTTAGTTGAATACGATTTGGAGAATGACA 1708 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1546 TAATTCTGGGAAGTTTCCAGCAACAGAACTATTTAGTTGAATACGATTTGGAGAATGACA 1605 Query 1709 GGTTTGGGTTCGCGAAG-AAGAAGTGTAGCCCGTGAGTTTTCAGGGGTAAATTTG 1762 ||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1606 GGTTTGGGTTCGCGAAGGAA-AAGTGTAGCCCGTGAGTTTTCAGGGGTAAATTTG 1659 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70924036190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5