BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52510.1 Length=651 Score E Sequences producing significant alignments: (Bits) Value Ahg938134 jgi|Araly1|938134|scaffold_502325.1 316 1e-85 Ahg938138 jgi|Araly1|938138|scaffold_502329.1 195 5e-49 Ahg898136 jgi|Araly1|898136|Al_scaffold_0005_2102 163 1e-39 > Ahg938134 jgi|Araly1|938134|scaffold_502325.1 Length=1076 Score = 316 bits (171), Expect = 1e-85 Identities = 391/493 (79%), Gaps = 31/493 (6%) Strand=Plus/Plus Query 77 TGCTTCGCAAAGTTTGGGAGGTGAGCAAGGA-AGATGGGCAGA-TGAGATCCGAGCATCA 134 ||||| ||| ||||||||||| |||||| || ||| ||||| | |||||| |||||||| Sbjct 520 TGCTTAGCACAGTTTGGGAGGAGAGCAA-GAGAGA-GGGCATAGTGAGATTCGAGCATC- 576 Query 135 AG-TGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGCAACGCTCCTCCTC 193 || ||||||||||||||||||||||||||||||||| |||||||||| | | | || Sbjct 577 AGATGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAACACTTATAGCA-C-CA--T--TC 630 Query 194 CTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTGTACTATGGAGCAG 253 |||||| | ||||| ||||||||||||||||||| | ||| | ||||| |||||||| Sbjct 631 CTCCTC--C-TCCTTACTCACAAGGTATCTCCATCGATGGTGTTTTGTATTATGGAGC-- 685 Query 254 CTTGGGTTGATGCA-AATAAATGTGTGCTCGTGAGTTTTGACTTGACTTTTGAAGAATTC 312 |||||||||| | |||| |||||||||| |||||||| |||||| || |||||| || Sbjct 686 -TTGGGTTGATA-AGAATAGATGTGTGCTCATGAGTTTTAACTTGAGTTCTGAAGAGTTT 743 Query 313 AATTTGATTGAGTTACCTGTAGAGGCTGGTATCATTTGGCACTC-ATATCGTGCTAACCT 371 ||||||||||| |||| || |||||||| ||||| |||||| | | ||| || || || Sbjct 744 AATTTGATTGAACTACCCGTTGAGGCTGGCATCATCTGGCACACGAC-TCGCGCGAATCT 802 Query 372 CGTTAACTACAGAGACAAATTAGA-TATTTTCGAATACTCTAAACTTGCGGT-TGATGCG 429 | | |||||||||| ||||||| | | |||| || ||||| | ||||| | ||||||| Sbjct 803 CATCAACTACAGAGGCAAATTA-ACTGTTTTTGAGTACTCCCGATTTGCG-TCTGATGCG 860 Query 430 AGTGTAGACCTAAGGGTTATGGAGGATGTGAAGAAGAAGAAGAAGTGGTCaaaaaaaaCT 489 || || || || ||||||||||| ||| | | |||||| ||||||||||| || ||| Sbjct 861 AGCGTGGATTTATGGGTTATGGAGAATGC-AGG--GAAGAAAAAGTGGTCAAACAAGACT 917 Query 490 TTGGTCTTGCCACTTGAC-CAAATGAATGTTGTCCATGGCGATGACTTGGTGCTGCCCGG 548 |||| ||||| ||| | || |||||| ||| || | ||||| | |||| | ||| || Sbjct 918 GTGGTATTGCCTCTTT-CTCAGATGAATTTTGCCCCTAGCGATAAGTTGGGGATGCAAGG 976 Query 549 CACGAGTCGCTGC 561 |||||| || ||| Sbjct 977 CACGAGCCGTTGC 989 > Ahg938138 jgi|Araly1|938138|scaffold_502329.1 Length=856 Score = 195 bits (105), Expect = 5e-49 Identities = 171/202 (85%), Gaps = 7/202 (3%) Strand=Plus/Plus Query 121 AGATCCGAGCATCAAGTGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGC 180 ||||| || ||||| || |||||||||||||||||||||| ||||||||| || | ||| Sbjct 661 AGATCAGAACATCAGGTTTTGGTACTTGGTCCTGGAGCTTCTTGGAGAAGCACCCAAAGC 720 Query 181 AACGCTCCTCCTCCTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTG 240 | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 721 CGCACTCCTCCTCCTGCTCATCATCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTG 780 Query 241 TACTATGGAGCAGCTTGGGTTGATGCAAATAAATGTGTG-CTCGTGAGTTTTGACTTGAC 299 || |||||||| || || |||| || || |||||| || ||| ||||||| |||| ||| Sbjct 781 TATTATGGAGC--CT-GGCTTGAAGCCAACAAATGT-TGGCTCATGAGTTTGGACT-GAC 835 Query 300 TTTTGAAGAATTCAATTTGATT 321 || ||||| | |||||| |||| Sbjct 836 TTCTGAAGGAGTCAATT-GATT 856 > Ahg898136 jgi|Araly1|898136|Al_scaffold_0005_2102 Length=1167 Score = 163 bits (88), Expect = 1e-39 Identities = 149/178 (84%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 77 TGCTTCGCAAAGTTTGGGAGGTGAGCAAGGAAGATGGGCAG--ATGAGATCCGAGCATCA 134 ||||| ||| ||||||||||||| || |||| | | | || | | |||||||||||| Sbjct 500 TGCTTAGCATAGTTTGGGAGGTGGGCGGGGAA-AAGAG-AGTTCTCAAATCCGAGCATCA 557 Query 135 AGTGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAGTACTTATAGCAACGCTCC-TCCTC 193 ||||||||||||||||||||||||||||||||||| ||| | |||| | ||| ||||| Sbjct 558 AGTGTTGGTACTTGGTCCTGGAGCTTATTGGAGAAACACTCAAAGCACCA-TCCCTCCTC 616 Query 194 CTCCTCATCGTCCTTTCTCACAAGGTATCTCCATCAACGGTATGTTGTACTATGGAGC 251 |||||||| |||||| | |||||||| |||||||||||||| | ||||| |||||||| Sbjct 617 CTCCTCATTGTCCTTACACACAAGGTTTCTCCATCAACGGTGTCTTGTATTATGGAGC 674 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23864946042 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5