BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52660.1
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485637 jgi|Araly1|485637|fgenesh2_kg.5__1629__AT3G52660.1 2538 0.0
> Ahg485637 jgi|Araly1|485637|fgenesh2_kg.5__1629__AT3G52660.1
Length=1642
Score = 2538 bits (1374), Expect = 0.0
Identities = 1520/1589 (96%), Gaps = 15/1589 (1%)
Strand=Plus/Plus
Query 76 TTTCAACACCTGAGGTGCGCG-A-AGATAGACACTTCTTCATCCTCTCCGTAATTCTCAA 133
|||||||||||||| |||||| | | | | |||||| |||||||||||||||||||||||
Sbjct 41 TTTCAACACCTGAGCTGCGCGAATAAACAAACACTTGTTCATCCTCTCCGTAATTCTCAA 100
Query 134 AATTAGGGTTTTCTTCCGGCAGCTCTCTCAGTTGTAC-TGCAAGCATTCTTTTCTAGATA 192
||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 101 AATTAGGGTTTTCTTCCGGCAGCTCTCTCAGTTGT-CTTGCAAGCGTTCTTTTCTAGATA 159
Query 193 TTTAAGATGTCAAGGACGAGGACTGCTGCTTCTGAGGCTCATGACTCCATGGAATCTGAG 252
|||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 160 CTTAAGATGTCAAGGACGAGGACTGCTGCTTCTGAGGCTCACGATTCAATGGAGTCTGAG 219
Query 253 GAAAGGGTAGACCTTGATGGTGACAATGATCCTGAGGAGATTCTggaggaggaagttgaa 312
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GAAAGGGTAGACCTTGACGGTGACAATGATCCTGAGGAGATTCTGGAGGAGGAAGTTGAA 279
Query 313 tacgaagaagttgaagaggagga-g--attgaagagatagaagaggagatagaggaggag 369
|| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 280 TATGAAGAAGTAGAAGAGGAGGAGGAAATTGAAGAGATAGAAGAGGAGATAGAGGAGGAG 339
Query 370 gttgaagtggaagaagaggaggaggaggaggatgctgttgcaacggaagaggaagaagaa 429
|| ||||| | ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 340 GTGGAAGT-G--GAAGA--A-GAGGAGGAGGATGCTGTTGCAACGGAAGAGGAAGAAGAA 393
Query 430 aagaaaaggCATGTTGAACTTCTTGCACTTCCTCCACATGGTTCAGAGGTTTATCTTGGA 489
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 394 AAGAAAAGGCATGTTGAACTCCTTGCACTTCCTCCACATGGTTCAGAGGTTTATCTTGGA 453
Query 490 GGGATTCCTACTGATGCTACTGAAGGGGACTTAAAGGGCTTCTGTGGATCTATAGGAGAA 549
|||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 454 GGGATTCCTACTGATGCTACTGAAGGGGACTTAAAGAGCTTCTGTCAATCAATAGGAGAA 513
Query 550 GTTACTGAGGTTAGGATAATGAGGGAAAAGGATTCTGGTGATGGAAAGGGGTATGCATTT 609
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 514 GTTACTGAGGTTAGGATAATGAGGGAAAAGGAATCTGGTGATGGAAAGGGGTATGCATTT 573
Query 610 GTAACATTCAGAAGTAAGGACTTAGCTGCTGAAGCAATTGATACTCTAAATAACACTGAC 669
|| |||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct 574 GTGACATTCAGAAACAAGGACTTAGCAGCTGAAGCAATCGATACTCTAAATAGCACTGAA 633
Query 670 TTCAGAGGTAAAAGGATAAAATGTTCGACTACCCAAGCAAAGCATCGTCTCTTTCTTGGT 729
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TTCAGAGGTAAAAGGATAAAATGTTCGACTACCCAAGCAAAGCATCGTCTCTTTCTTGGC 693
Query 730 AATGTCCCTAGAAATTGGA-TGGAGTCAGACATTAAGAAAGCAGCAAATAGAATTGGTCC 788
||||| ||||||||||||| | ||||||||||||||||||||||| |||| |||||||||
Sbjct 694 AATGTTCCTAGAAATTGGACT-GAGTCAGACATTAAGAAAGCAGCGAATAAAATTGGTCC 752
Query 789 AGGCGTTCAAATTGTCGAACTCCCAAAGGAACCACAAAATATGGGCCGGAATCGTGGATT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 AGGCGTTCAAATTGTCGAACTCCCAAAGGAACCACAAAATATGGGCCGGAATCGTGGATT 812
Query 849 TGCTTTCATCGAGTATTACAACCATGCATGTGCTGAATACTCGAAACAAAAAATGTCAAA 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TGCTTTCATCGAGTATTACAACCATGCATGTGCTGAATACTCGAAACAAAAAATGTCAAA 872
Query 909 TCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCAAGGAGTGG 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TCCGAGTTTTAAGCTTGATGATAATGCCCCAACTGTAAGCTGGGCTGAATCAAGGAGTGG 932
Query 969 AGGAGGAGGAGATTCTTCGGCTTCCCAGGTCAAGGCATTGTACATCAAGAACTTACCTAG 1028
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 933 AGGAGGAGGAGACTCTTCGGCTTCCCAGGTCAAGGCATTGTACATCAAGAACTTGCCTAG 992
Query 1029 AGATATAACACAAGAGCGTCTAAAGGCATTATTTGAACATCACGGGAAAATACTGAAAGT 1088
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 AGATATAACACAAGAACGTCTAAAGGCATTATTTGAACATCACGGGAAAATACTGAAAGT 1052
Query 1089 GGTGATCCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTGCATTATGC 1148
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1053 GGTGATTCCACCAGCAAAACCAGGAAAGGAAGACAGTAGATACGGATTTGTGCACTATGC 1112
Query 1149 AGAGAGGACAAGTGTCATGCGAGCTTTGAAAAACACTGAAAGATATGAGATTGATGGTCA 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 AGAGAGGACAAGTGTCATGCGAGCTTTGAAAAACACTGAAAGATATGAGATTGATGGTCA 1172
Query 1209 TATGTTGGATTGTACTCTGGCAAAGCCTCAAGCTGATCAAAAGACGAATACAAATACAGT 1268
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1173 TATGTTGGATTGTACTCTGGCAAAGCCTCAAGCGGATCAAAAGGCGAATACAAATACAGT 1232
Query 1269 TCAGAATGTGCAGAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCAT 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 TCAGAATGTGCAGAAATCACAATTGCAACCAAACTATCCTCCTCTTCTTAGTTATGGCAT 1292
Query 1329 GGCTCCTAGTCCCTTTGGTGCTCTCGGTGGATTTGGAGCTTCTGCCTACTCACAACCATT 1388
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1293 GGCTCCTAGTCCCTTTGGTGCTCTTGGTGGATTTGGAGCTTCTGCCTACTCACAACCATT 1352
Query 1389 AATGCATGCCGGAGGTCACGCAGCCGGTGGAATGTCGATGATGCCAATCATGTTACCCGA 1448
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1353 AATGCATGCGGGAGGTCACGCAGCTGGTGGAATGTCGATGATGCCAATAATGTTACCCGA 1412
Query 1449 TGGGAGAATCGGATACGTCTTGCAACAGCCTGGACTAGCAGCTATGCCGCAACCACCACC 1508
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1413 TGGAAGAATCGGATACGTCTTGCAACAGCCTGGACTAGCAGCTATGCCACAACCACCACC 1472
Query 1509 AAGGCATTCTCCACCGTATAGGGGAGGCAGCGGTTCGAGCAGCAGCAGCGGCAGCAAACG 1568
||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1473 AAGGCCTTCTCCACCATATAGGGGAGGCAGCGGTTCGAGCAGCAGCAGCAGCAGCAAACG 1532
Query 1569 AAGTAGTGACAACGGTAGAGGACGAAGCCGTTACAATCCTTATTAGTAATTTCATAATTA 1628
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1533 AAGTAGCGACAATGGTAGAGGACGAAGCCGTTACAATCCTTATTAGTAATTTAATAATTC 1592
Query 1629 TGTTTTCTTTATTGGGAAAAACACCCCAA 1657
||| ||||||||| |||||||||||||||
Sbjct 1593 TGTCTTCTTTATTTGGAAAAACACCCCAA 1621
Score = 63.9 bits (34), Expect = 4e-09
Identities = 37/38 (97%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 20 AGTCTCGCTTAGGCATCTTTTAGGTCATATCAATACAA 57
|||||||||||||||||||||||||||||||| |||||
Sbjct 1 AGTCTCGCTTAGGCATCTTTTAGGTCATATCA-TACAA 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67000740955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5