BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52720.1 Length=1031 Score E Sequences producing significant alignments: (Bits) Value Ahg485641 jgi|Araly1|485641|fgenesh2_kg.5__1633__AT3G52720.1 1476 0.0 > Ahg485641 jgi|Araly1|485641|fgenesh2_kg.5__1633__AT3G52720.1 Length=1029 Score = 1476 bits (799), Expect = 0.0 Identities = 942/1010 (93%), Gaps = 14/1010 (1%) Strand=Plus/Plus Query 22 CTCCACAGAGATTTCCAACAAAACAGGAACTAAAACACAAGATGAAGATTATGATGATGA 81 ||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||| Sbjct 30 CTCCACAGAGATTTCCAACAAAACAGGAATTAAAATACAAGATGATGATGATGATGATGA 89 Query 82 TTAAGCTCTGCTTCTTCTCCAT-GTCCCTCATCTGCATTGCACCTGCAGATGCTCAGACA 140 |||||||||||||||| |||| | ||||| |||||||||| |||||| ||||||||||| Sbjct 90 TTAAGCTCTGCTTCTTAGCCATAG-CCCTCCTCTGCATTGCTCCTGCAAATGCTCAGACA 148 Query 141 GAAGGAGTAGTGTTTGGATATAAAGGCAAAAATGGACCAAACCAATGGGGACACTTAAAC 200 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 149 CAAGGAGTAGTGTTTGGATATAAAGGCAAAAATGGACCAAACCAATGGGGACATTTAAAC 208 Query 201 CCTCACTTCACCACATGCGCGGTCGGTAAATTGCAATCTCCAATTGATATTCAAAGGAGG 260 ||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 209 CCTCACTTCACCAAATGCGCGGTGGGTAAATTGCAATCTCCAATTGATATCCAAAGGAGA 268 Query 261 CAAATATTTTACAACCACAAATT-GAATTCAATACACCGTGAATACTACTTCACAAACGC 319 ||||||||||| |||| || ||| ||| || ||||||| || ||||| |||||||| || Sbjct 269 CAAATATTTTATAACCGCAGATTGGAA-TCGCTACACCGCGATTACTATTTCACAAATGC 327 Query 320 AACACTAGTGAACCACGTCTGTAATGTTGCCATGTTCTTCGGGGAGGGAGCAGGAGATGT 379 ||| || ||||||||||||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 328 AACGCTGGTGAACCACGTCTGTAATGTTGCGATGTTCTTTGGGGAAGGAGCAGGAGATGT 387 Query 380 GATAATAGAAAACAAGAACTATACCTTACTGCAAATGCATTGGCACACTCCTTCTGAACA 439 |||||| || || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 388 GATAATCGATAATAAGAACTATACCTTACTGCAAATGCATTGGCATACTCCTTCTGAACA 447 Query 440 TCACCTCCATGGAGTCCAATATGCAGCTGAGCTGCACATGGTACACCAAGCAAAAGATGG 499 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 TCATCTCCATGGAGTCCAATATGCAGCTGAGCTGCACATGGTACACCAAGCAAAAGATGG 507 Query 500 AAGCTTTGCTGTGGTGGCAAGTCTCTTCAAAATCGGCACTGAAGAGCCTTTCCTCTCTCA 559 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 508 AAGCTTTGCTGTGGTGGCAAGTCTCTTCAAAATCGGCACCGAAGAGCCTTTCCTCTCTCA 567 Query 560 GATGAAGGAGAAATTGGTGAAGCTAAAGGAAGAGAGACTCAAAGGGAACCACACAGCACA 619 ||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 568 GATGAAGGATAAATTGGTGAAGCTAAAGGAAGAGAGATTCAAAGGGAACCAAACAGCACA 627 Query 620 AGTGGAAGTAGGAAGAATCGACACAAGACACATTGAACGTAAGACTCGAAAGTACTACAG 679 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| Sbjct 628 AGTGGAAGTAGGAAGAATCGACACAAGACACATCGAACGTAGGACTCGAAAGTACTTCAG 687 Query 680 ATACATTGGTTCACTCACTACTCCTCCTTGCTCCGAGAACGTTTCTTGGACCATCCTTGG 739 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 688 ATACGTTGGTTCACTCACTACTCCTCCTTGCTCCGAGAACGTTTCTTGGACCATCCTTGG 747 Query 740 CAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACTCAGATCTCCATTGGACACTTC 799 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 748 CAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACTCAGATCTCCATTGGATAAATC 807 Query 800 TTTCAAGAACAATTCAAGACCGTGTCAACCCCT-CAACGGCCGGAGAGTTGAGATGTTCC 858 ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 808 TTTCAAGAACAATTCAAGACCTTGTCAACCCCTACA-CGGCCGGAGAGTTGAGATGTTCC 866 Query 859 ACGACCACGAGCGTGTCGATaaaaaagaaaccggtaacaaaaagaaaaaacccaattaaa 918 |||||| | |||||||| |||||| ||||| ||||||||||||||||||||||||| Sbjct 867 ACGACC--G----TGTCGATATAAAAGACACCGGCAACAAAAAGAAAAAACCCAATTAAA 920 Query 919 aTAGTT-TTACATTGTCTATTGGTTTGTTTAGAACCCTAATTAGCTTTGTAAAACTAATA 977 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 921 ATA-TTGTTACATTGTCTATTGGTTTGTTTAGAACCCTAATTAGCTTTGTAAAACTAATA 979 Query 978 ATCTCTTATGTAGTACTGTGTTGTTGTTTACGACTTGATATACGATTTCC 1027 |||||||||| |||||||||||||||||| ||||||||| | || ||||| Sbjct 980 ATCTCTTATGGAGTACTGTGTTGTTGTTTGCGACTTGATCTTCGTTTTCC 1029 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38351654502 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5