BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52740.1 Length=591 Score E Sequences producing significant alignments: (Bits) Value Ahg485645 jgi|Araly1|485645|fgenesh2_kg.5__1637__AT3G52740.1 769 0.0 > Ahg485645 jgi|Araly1|485645|fgenesh2_kg.5__1637__AT3G52740.1 Length=535 Score = 769 bits (416), Expect = 0.0 Identities = 482/512 (94%), Gaps = 12/512 (2%) Strand=Plus/Plus Query 84 CTATTGTGTCATCATGATGAACATCGACGATACGACGTCTCCAATGGCCCACCCGATCGG 143 ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 32 CTATTGTGTAATCATGATGAACATCGACGATACGACGTCTCCAATGGCTCACCCGATTGG 91 Query 144 TCCATCTCAGCCTCCTTCCGACCAAACCAAACAAGATCCGCCAAGTTTGCCCCA-AGAAG 202 |||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| Sbjct 92 TCCATCTCAGCCTCTTTCCGACCAAACCAAACAAGATCCGCCAAGTTTG-CCCAGCGAAG 150 Query 203 CAGCTTCTTCTGTTTCGGCCGACAAGAAAGATCTAGCTTTGCTTGAAGAGAAACCGAAGC 262 ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| | Sbjct 151 CAGCTTCTTCTGTTT---CCGACAAGAAAGATCTAGCTTTACCTGAAGAGAAACCGAAAC 207 Query 263 AGAGTCAAGAAGAAGATAGAGTGGACACTGGGAGAGAGAGGTTAAAGAAGCATCGGAGAG 322 ||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 208 AGAATCAAGAAG-AG--AGAGTGGACACTGGGAGAGAGAGGTTAAAGAAGCACCGGAGAG 264 Query 323 AGATCGCTGGTAGGGTTTGGATACCGGAGATATGGGGACAAGAAGAGCTTCTTAAGGATT 382 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 265 AGATCGCCGGTAGGGTTTGGATACCTGAGATATGGGGACAAGAAGAGCTTCTTAAGGATT 324 Query 383 GGATCGATTGTTCAACGTTTGACACGTGTCTAGTCCCTGCCGGAATCTCGTCTGCACGTA 442 |||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| Sbjct 325 GGATCGATTGTTCAGCGTTTGACACATGTCTAGTCCCTGCCGGAATATCGTCTGCACGTG 384 Query 443 CTGCTCTCGTAGAGGAAGCTAGGCGAGCTGCTTCAGCTTCTGGTGGGTTACATAATCGTT 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 385 CTGCTCTCGTAGAGGAAGCTAGGCGAGCTGCTTCAGCTTCTGGTGGGTTACATAATCGTT 444 Query 503 GCTTGATCTTACGTTGAATTTAATATAATAAGATAACATACTTATAAATGTGGTTCTTGT 562 ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 445 GCTTGATCTTACGCTGAATCTAATATAATAAGATA-CATACTTATAAATGTGGTTCTTGT 503 Query 563 TCCTCAATAATA-TA-A-GGCACTATTGTTAC 591 |||||||||||| || | |||||||||||||| Sbjct 504 TCCTCAATAATAATATAAGGCACTATTGTTAC 535 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21634218963 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5