BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52800.1
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485652 jgi|Araly1|485652|fgenesh2_kg.5__1644__AT3G52800.1 1485 0.0
Ahg887716 jgi|Araly1|887716|Al_scaffold_0278_1 340 1e-92
Ahg934258 jgi|Araly1|934258|scaffold_402246.1 222 4e-57
> Ahg485652 jgi|Araly1|485652|fgenesh2_kg.5__1644__AT3G52800.1
Length=1081
Score = 1485 bits (804), Expect = 0.0
Identities = 1019/1111 (92%), Gaps = 61/1111 (5%)
Strand=Plus/Plus
Query 28 AAAAATAAAATACCGTTAATAATTTTTTGCTATTTAATTTTAAGCAGCGTCGTCTCTGTT 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATAAAATACCGTTAATAATTTTTTGCTATTTAATTTTAAGCAGCGTCGTCTCTGTT 60
Query 88 TTCGCCGTTGtttccttcttcttcttcttcttctttctctttcttatatct--tttttct 145
||||||||||||| | |||||||||| || |||||||||||||||||||| |||||||
Sbjct 61 TTCGCCGTTGTTT-C--CTTCTTCTTC-TC-TCTTTCTCTTTCTTATATCTCCTTTTTCT 115
Query 146 cttcccaattttctcatcgatcactgaatcttcttcttcttcttcttccttctctCAAGA 205
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 116 CTTCCCAATTCTCTCATCGATCACTGAA---TCTTCTTCTTCTTCTTCCTTCTCTCAAGA 172
Query 206 ACA-G--AttttttttAAACGAGCTTGATCAATAAATTCTCTCAAGATCTATGGCGGAAG 262
||| | | || |||| ||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 173 ACAGGTAAATTATTTTCAACGAGCTTGATCGATAAATTCTCTCAAGATCCATGGCGGAAG 232
Query 263 AGCATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGTGGCTTCCTCG 322
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 AACATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGTGGCTTCCTCG 292
Query 323 GCAGCTCCGCCACCATGAATCTCTGTTCTAATTGTTACGGCGATCTTTGTCTCAAACAAC 382
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 293 GCAGCTCCGCCACCATGAATCTCTGTTCTAATTGCTACGGCGATCTTTGCCTCAAACAAC 352
Query 383 AACAACAATCCTCCTCCATCAAATCCACCGTTGAATCTTCCCTCTCTGTATCTCCTCCGT 442
|||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 353 AACAACAA---TCCTCCATCAAATCCACCGTCGAATCTTCCCTCTCCGTATCTCCTCCTT 409
Query 443 CGTCATCATC----ATCG--GAGATCTCTTCTCCGATCATCCCTCCTCTCCTTAAAAATC 496
| |||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 410 CATCATCATCGGAGATCGCTTCCATCTCTTCTCCGATCATCCCTCCTCTCCTTAAAACTC 469
Query 497 CATCAGTCAAGCTAGAGGTACCGGAGAAAAAGGCGGTGATTTCGCTGCCGACGACGGAGC 556
| || ||||||||||||||||||||||||||| |||||| || | |||| | ||||||
Sbjct 470 CCTCCGTCAAGCTAGAGGTACCGGAGAAAAAGCCGGTGAATT--C-GCCG-C--CGGAGC 523
Query 557 AGAATCAGCAACAGAGGCCGAATCGGTGCACGACGTGTAGGAAACGGGTCGGGTTAACCG 616
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 524 AGAATCAGCAACAGAGGCCGAATCGGTGCACGACGTGTAGAAAACGGGTCGGGTTAACCG 583
Query 617 GATTCAAGTGCCGGTGCGGTACGATGTTTTGCGGGGTTCATAGGTACCCGGAGATCCATG 676
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 584 GATTCAAGTGCCGGTGCGGTACGATGTTTTGTGGGGTCCATAGGTACCCGGAGATCCATG 643
Query 677 GATGCAGCTACGATTTCAAATCGGCCGGACGTGAAGAGATCGCGAAAGCGAATCCGTTGG 736
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 644 GATGCAGCTACGATTTCAAATCGGCCGGTCGTGAAGAGATCGCGAAAGCGAATCCGTTGG 703
Query 737 TGAAAGCAGCGAAGCTTCAGAAGATATGATCAGAGCCGTTCGATGCGTTGACTTTTCCTC 796
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 704 TGAAAGCAGCGAAGCTTCAGAAGATTTGATCAGAGCCGTTCGATGCGTTGAC-TTT--TC 760
Query 797 TCGTAAGTCTTC-A-TTTCTACGCGTATGTGTGTCCTCCGTCCCCCGAGAAATACGGATG 854
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TCGTAAGTCTTCAATTTTCTACGCGTATGTGTGTCCTCCGTCCCCCGAGAAATACGGATG 820
Query 855 GTGTCGATTTGATTGATCTCAGCCGTTGGATCAAAAATGGTTTATTATTGTAAAAGATTG 914
||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 821 GTGTCGA--T--TTGATCTCAGCCGTTGGATC--AAATGGTTTATTATTGTAAAAGATTG 874
Query 915 ATTATGTATTTATCAAAGGGACACGTGTCACGTGGTTTTAGGATGGAGACGctttcgctt 974
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 875 ATTATGTATTTATCAAAGGGACACGTGTCACGTGGTTTTAGGATGGAGATGCTTTCGCTT 934
Query 975 t-ttctcc-tt--c----a-ttttattttctttttcctttcagaaagaaataagattatt 1025
| |||| | || | | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 935 TCTTCTTCATTTTCCTTTAATTTTATTTTCTTTTTCCTT-CAGAAAGAAATAAGATTATT 993
Query 1026 cgcgttggctttttctttttatta---------AATTCCGGCttattattattattattG 1076
|||||||||||||| ||||| || ||||||||||||||||||||||| |
Sbjct 994 CGCGTTGGCTTTTTTTTTTTTTTTTTTTTTTTTAATTCCGGCTTATTATTATTATT---G 1050
Query 1077 TGTGGCTTTTGCGTGTACAAAGTCTATTCAG 1107
|||||||||||||||||||||||||||||||
Sbjct 1051 TGTGGCTTTTGCGTGTACAAAGTCTATTCAG 1081
> Ahg887716 jgi|Araly1|887716|Al_scaffold_0278_1
Length=345
Score = 340 bits (184), Expect = 1e-92
Identities = 242/267 (91%), Gaps = 15/267 (6%)
Strand=Plus/Plus
Query 253 ATGGCGGAAGAGCATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGT 312
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCGGAAGAACATCGATGTCAGACATCAGAAAGCAACCGTCTCTGTGTTAACAACAGT 60
Query 313 GGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGTTACGGCGATCTTTGT 372
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 GGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGCTACGGCGATCTCTGT 120
Query 373 CTCAAACAACAACAACAATCCTCCTCCATCAAATCCACCGTTGAATCTTCCCTCTCTGTA 432
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 121 CTCAAACAACAACAACAATCCTCC---ATCAAATCCACCGTCGAATCTTCCCTCTCCGTA 177
Query 433 TCTCCTCCGTCGTCATCATCATCGGAGAT--CT-C--T-TCT-C-C-GATCATCCCTCCT 483
|||||||| | ||||||||||||||||| || | | ||| | | |||||||||||||
Sbjct 178 TCTCCTCC-T--TCATCATCATCGGAGATTGCTTCCATATCTTCTCCGATCATCCCTCCT 234
Query 484 CTCCTTAAAAATCCATCAGTCAAGCTA 510
|||||||||| ||| || |||||||||
Sbjct 235 CTCCTTAAAACTCCCTCCGTCAAGCTA 261
> Ahg934258 jgi|Araly1|934258|scaffold_402246.1
Length=761
Score = 222 bits (120), Expect = 4e-57
Identities = 183/212 (86%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 572 GGCCGAATCGGTGCA-CGACGTGTAGGAAACGGGTCGGGTTAACCGGATTCAAGTGCCGG 630
|||||||||| |||| || |||||||||||||||||||||||||||||| | |||||||
Sbjct 313 GGCCGAATCGATGCACCG-TGTGTAGGAAACGGGTCGGGTTAACCGGATTTATGTGCCGG 371
Query 631 TGCGGTACGATGTTTTGCGGG-GTTCATAGGTACCCGGAGATCCATGGATGCA-GCTACG 688
||||| |||| |||||| ||| || |||||||| |||||| | || || |||| | | ||
Sbjct 372 TGCGGGACGACGTTTTGTGGGAGT-CATAGGTATCCGGAGGTTCACGGTTGCACGTT-CG 429
Query 689 ATTTCAAATCGGCCGGACGTGAAGAGATCGCGAAAGCGAATCCGTTGGTGAAAGCAGCGA 748
||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||| ||||
Sbjct 430 ATTTCAAATCGGCGGGACGTGAAGAGATCGCGAAAGCTAATCCGTTGGTTATAGCGGCGA 489
Query 749 AGCTTCAGAAGATATGA-TC--AG-AGCCGTT 776
|||||||||| |||||| || || |||||||
Sbjct 490 AGCTTCAGAAAATATGAATCGGAGGAGCCGTT 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5