BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52880.2
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485659 jgi|Araly1|485659|fgenesh2_kg.5__1651__AT3G52880.1 2207 0.0
> Ahg485659 jgi|Araly1|485659|fgenesh2_kg.5__1651__AT3G52880.1
Length=1575
Score = 2207 bits (1195), Expect = 0.0
Identities = 1362/1439 (95%), Gaps = 25/1439 (2%)
Strand=Plus/Plus
Query 236 GGATACGCAGCTAAGGAGTTTGCCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATC 295
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 140 GGATACGCAGCTAAGGAGTTTGCTAATCAAGGGGTTAAACCAGGAGAATTGGCTGTTATC 199
Query 296 TCGAAAGAGGCGGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TCGAAAGAGGCGGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCT 259
Query 356 GAAGGGGCTGCTAGACTTCCAGGTTTCCATTGCTGTGTTGGTAGTGGTGGAGAAAAACTG 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 260 GAAGGGGCTGCTAGACTTCCAGGGTTCCATTGCTGTGTTGGTAGTGGTGGAGAAAAACTG 319
Query 416 CTTCCTGAATCCTACAAGCAGAAAGGAATTGAGTTGATACTAAGCACAGAAATAGTGAAA 475
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 320 CTTCCTGAATCCTACAAGCAGAAAGGGATTGAGTTGATACTAAGTACAGAAATAGTGAAA 379
Query 476 GCTGATCTCT-CTGCCAAGAGTCTTGTCAGTGCAACTGGGGATGTCTTCAAGTATCAGAC 534
|||||||| | ||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 380 GCTGATCT-TGCTGCCAAGAGTCTTGTCAGTGCAGCAGGGGATGTCTTCAAATATCAGAC 438
Query 535 GCTCATAATTGCAACTG---G-TTC-TAC----TGTT-CT---CA-G----ATTGACTGA 576
|||||||||||||||| | ||| ||| | || || | | |||||||||
Sbjct 439 TCTCATAATTGCAACTGAAAGCTTCTTACAAATTCTTACTGGAGAGGAAACATTGACTGA 498
Query 577 TTTTGGAGTAAAAGGTGCAGACTCTAAGAATATCCTCTATCTGAGAGAGATTGATGATGC 636
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 499 TTTTGGAGTAAAAGGTGCAGACTCTAAGAATATCCTTTATCTGAGGGAGATCGATGACGC 558
Query 637 CGACAAATTGGTTGAAGCAATTAAAGCTAAGAAAGGTGGAAAGGCTGTAGTTGTTGGCGG 696
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 559 CGACAAATTGGTTGAAGCAATTAAAGCTAAGAAAGGCGGAAAGGCTGTAGTTGTTGGTGG 618
Query 697 AGGTTACATTGGTCTTGAGCTTAGTGCAGTTTTAAGGATCAACAATTTAGATGTCACTAT 756
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 619 AGGTTACATTGGTCTTGAGCTTAGTGCAGCTTTGAGGATCAACAATTTTGATGTCACTAT 678
Query 757 GGTTTTCCCTGAACCTTGGTGCATGCCTAGGCTTTTCACCGCCGATATTGCTGCTTTCTA 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GGTTTTCCCTGAACCTTGGTGCATGCCTAGGCTTTTCACCGCCGATATTGCTGCTTTCTA 738
Query 817 TGAGACTTACTATACAAACAAGGGAGTGAAGATCATTAAAGGAACAGTGGCATCTGGGTT 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TGAGACTTACTATACAAACAAGGGAGTGAAGATCATTAAAGGAACAGTGGCATCTGGGTT 798
Query 877 CACAGCTCAGCCAAATGGAGAGGTGAAGGAAGTACAACTCAAGGATGGGAGGACATTGGA 936
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 799 CACTGCTCAGCCAAATGGAGAGGTGAAGGAAGTACAACTTAAGGATGGGAGGACACTGGA 858
Query 937 AGCCGACATTGTGATAGTTGGGGTTGGTGCAAAACCATTGACATCCTTATTCAAGGGACA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AGCCGACATTGTGATAGTTGGGGTTGGTGCAAAACCATTGACATCCTTATTCAAGGGACA 918
Query 997 GGTCGAGGAAGATAAAGGTGGAATTAAGACCGATGCATTCTTCAAAACAAGTGTTCCAGA 1056
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GGTCGAAGAAGACAAAGGTGGAATTAAGACCGATGCATTCTTCAAAACAAGTGTTCCAGA 978
Query 1057 TGTTTACGCTGTTGGTGACGTTGCTACTTTCCCTTTGAAAATGTACGGAGACGTGAGAAG 1116
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 979 TGTCTATGCTGTTGGTGACGTTGCCACTTTCCCTTTGAAAATGTACGGAGACGTGAGAAG 1038
Query 1117 GGTCGAGCATGTTGACCATTCCCGCAAATCAGCAGAGCAAGCTGTTAAGGCGATCAAAGC 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 GGTCGAGCATGTTGACCATTCCCGCAAATCAGCAGAGCAAGCTGTTAAGGCGATCAAAGC 1098
Query 1177 GGCTGAGGGAGGCGCAGCGGTGGAGGAATACGACTATCTTCCATTCTTCTACTCTCGCTC 1236
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 GGCTGAGGGAGGTGCAGCGGTGGAGGAATACGACTATCTTCCATTCTTCTACTCTCGCTC 1158
Query 1237 CTTTGATCTCTCATGGCAGTTCTACGGAGACAACGTAGGAGACTCTGTGTTATTTGGAGA 1296
|||||| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1159 CTTTGACCTCTCGTGGCAGTTCTATGGAGACAACGTAGGAGACTCTGTGTTGTTCGGAGA 1218
Query 1297 CAGCAATCCATCAAACCCAAAACCAAGATTTGGAGCATATTGGGTTCAAGGTGGTAAAGT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 CAGCAATCCATCAAACCCAAAACCAAGATTTGGAGCATATTGGGTTCAAGGTGGTAAAGT 1278
Query 1357 GGTTGGAGCATTCATGGAGGGAGGTAGTGGTGATGAGAACAAAGCCTTGGCTAAAGTCGC 1416
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1279 GGTTGGAGCATTCATGGAGGGAGGTAGTGGTGACGAGAACAAGGCTTTGGCTAAAGTCGC 1338
Query 1417 CAAAGCTCGACCTTCTGCAGAGAGTCTCGACGAGCTCGTGAAACAAGGAATTTCCTTCGC 1476
||||||||||||||||||||||||||| || |||||| |||||||||||||| |||||
Sbjct 1339 CAAAGCTCGACCTTCTGCAGAGAGTCTTGAGGAGCTCACCAAACAAGGAATTTCGTTCGC 1398
Query 1477 AGCTAAGATCTGAGTGAAACACAACCACCAAAACAAACTCACGTTTTCTCTTCTATGTTA 1536
|||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||
Sbjct 1399 AGCTAAGATCTGAGTGAAACACAACCACCAAA-CAAACTCGCTTTTTCTCTTCCATGTTA 1457
Query 1537 AAATAAAAACTTGTTTAGCTA-TAATAAGTTGTGTGTTTGTATTGTCTCTCTAAA--CTC 1593
|||||||||| | |||||| | ||||||||||||||||||||||| ||||||||| |||
Sbjct 1458 AAATAAAAACATATTTAGCAAATAATAAGTTGTGTGTTTGTATTGCCTCTCTAAAAACTC 1517
Query 1594 CATGAGAAGAGTCTACGGCAGAGGAAACCCTGAACCACATTCACATTTTAGATCATGTG 1652
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1518 TATGAGAAGAGTATACGGCAGAGGAAACC-TGAACCACATTCACATTTTAGATCATGTG 1575
Score = 224 bits (121), Expect = 2e-57
Identities = 133/139 (96%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 1 CATATTAGCCTTTTTGCTCTTTCTTTGCTTCTCTAACAAACCAACTTCAGCGACAAGATA 60
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 1 CATATTAGCCTTTTTGCTCTTTCTTTTCTTCTCCAACAAACCAACTTCAGCGACGAGATA 60
Query 61 ACAAAACGCTTTCACACGATCGGATAAAATGGCGGAGAAGAGCTTTAAGTACATCATCCT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAAAACGCTTTCAGACGATCGGATAAAATGGCGGAGAAGAGCTTTAAGTACATCATCCT 120
Query 121 CGGCGGCGGCGTCTCTGCC 139
||||||||| ||||| |||
Sbjct 121 CGGCGGCGGTGTCTCAGCC 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5