BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G52930.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938186 jgi|Araly1|938186|scaffold_502377.1 1831 0.0
Ahg932184 jgi|Araly1|932184|scaffold_400172.1 313 4e-84
> Ahg938186 jgi|Araly1|938186|scaffold_502377.1
Length=1119
Score = 1831 bits (991), Expect = 0.0
Identities = 1071/1110 (96%), Gaps = 4/1110 (0%)
Strand=Plus/Plus
Query 179 TCTCGATCTCTCCGTC-CAACTATGTCTGCCTTCACAAGCAAATTCGCCGATGAGTTGAT 237
|||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1 TCTCGATCTCTCCGTCTAAAC-ATGTCTGCCTTCACCAGCAAATTCGCCGATGAGTTGAT 59
Query 238 CGCCAACGCTGCCTACATCGGCACACCTGGAAAAGGTATTTTGGCTGCTGATGAGTCCAC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGCCAACGCTGCCTACATCGGCACACCTGGAAAAGGTATTTTGGCTGCTGATGAGTCCAC 119
Query 298 TGGTACCATTGGAAAGCGTCTTGCGAGCATCAACGTCGAGAACGTTGAGACCAACAGACG 357
||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 120 TGGTACCATCGGAAAGCGTCTAGCTAGCATCAACGTTGAGAACGTTGAGACCAACAGACG 179
Query 358 TAACCTCCGTGAGCTTCTCTTCACCGCCCCTGGTGCTCTTCCATGCCTCAGTGGTGTCAT 417
|| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 180 TATCCTCCGTGAGCTTCTTTTCACCGCCCCTGGTGCTCTTCCTTGCCTTAGTGGTGTCAT 239
Query 418 CCTTTTCGAAGAGACTCTGTACCAAAAGAGTTCCGATGGTAAGCTTTTCGTTGATATCTT 477
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 240 CCTTTTCGAAGAGACTCTTTACCAAAAGAGTTCCGATGGCAAGCTTTTTGTTGATATCTT 299
Query 478 GAAGGAAGGAGGAGTTCTTCCCGGTATCAAGGTTGACAAGGGTACCGTTGAGCTAGCTGG 537
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 GAAGGAAGGAGGAGTTCTTCCCGGTATCAAGGTTGACAAGGGTACCATTGAGCTAGCTGG 359
Query 538 AACCGACGGTGAGACCACCACTCAAGGTCTTGACGGTCTCGGTGACAGATGCAAGAAGTA 597
|||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 360 AACCAACGGTGAGACCACCACTCAAGGTCTTGACGGTCTTGGTGACCGATGCAAGAAGTA 419
Query 598 CTACGAAGCTGGTGCTCGTTTCGCCAAGTGGCGTGCAGTCCTCAAGATCGGAGAGAACGA 657
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 CTACGAAGCTGGTGCTCGTTTCGCCAAGTGGCGTGCAGTCCTCAAGATCGGCGAGAACGA 479
Query 658 GCCATCTGAGCAT-TCCATTCATGAGAACGCTTACGGATTAGCTAGATACGCTGTTATCT 716
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCCATCTGAGC-TATCCATCCATGAGAACGCTTACGGATTAGCTAGATACGCTGTTATCT 538
Query 717 GCCAAGAGAACGGTCTTGTACCAATTGTCGAGCCTGAGATCCTAGTCGATGGATCCCATG 776
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 539 GCCAAGAGAACGGTCTTGTACCCATTGTTGAGCCTGAGATCCTAGTTGATGGATCCCATG 598
Query 777 ACATCCAGAAGTGTGCTGCCGTGACTGAGCGTGTCCTTGCAGCTTGCTACAAGGCTCTTA 836
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 599 ACATCCAGAAGTGTGCTGCTGTGACTGAGCGTGTTCTTGCAGCTTGCTACAAGGCTCTTA 658
Query 837 GCGACCACCACGTCTTGCTCGAGGGTACACTCTTGAAGCCTAACATGGTTACTCCCGGAT 896
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 659 GCGACCACCACGTCTTGCTCGAGGGTACCCTCTTGAAGCCTAACATGGTGACACCCGGAT 718
Query 897 CTGACAGCCCCAAGGTTTCACCTGAAGTCATCGCTGAGCACACCGTCCGTGCCCTTCAGA 956
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAGACAGCCCCAAGGTTTCACCTGAAGTCATCGCTGAGCACACCGTCCGTGCCCTTCAGA 778
Query 957 GAACCGTCCCAGCAGCTGTTCCAGCCATTGTCTTCTTATCTGGAGGACAGAGCGAGGAAG 1016
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 779 GAACCGTCCCAGCAGCTGTTCCAGCCATTGTCTTCTTATCCGGTGGACAGAGTGAGGAAG 838
Query 1017 AAGCTACCAGGAACTTGAACGCCATGAACCAGTTGAAGACCAAGAAGCCATGGTCATTGT 1076
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AAGCTACAAGGAACTTGAACGCCATGAACCAGTTGAAGACCAAGAAGCCATGGTCATTGT 898
Query 1077 CTTTCTCATTCGGACGTGCGTTGCAGCAGTCTACCTTGAAGACATGGGCAGGTAAAGAGG 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 CTTTCTCATTCGGACGTGCGTTGCAGCAGTCTACCTTGAAGACATGGGCAGGCAAAGAGG 958
Query 1137 AGAATGTCAAGGCAGCTCAAGAGGCGTTGTATGTGAGGTGCAAGGCTAACTCTGAAGCCA 1196
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 AGAATGTCAAGGCAGCTCAAGAGGCGTTGTATGTGAGGTGCAAGGCCAACTCTGAAGCCA 1018
Query 1197 CACTCGGAACCTACAAGGGTGACGCTAAGCTTGGTGATGGAGCAGCTGAGAGCCTTCACG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CACTCGGAACCTACAAGGGTGACGCTAAGCTTGGTGATGGAGCAGCTGAGAGCCTTCACG 1078
Query 1257 TGAAGGATTACAAGTACTGAGCATCGTCCA 1286
|||| |||||||||||||||||||||||||
Sbjct 1079 TGAAAGATTACAAGTACTGAGCATCGTCCA 1108
> Ahg932184 jgi|Araly1|932184|scaffold_400172.1
Length=994
Score = 313 bits (169), Expect = 4e-84
Identities = 189/199 (95%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 1063 GCCATGGTCATTGTCTTTCTCATTCGGACGTGCGTTGCAGCAGTCTACCTTGAAGACATG 1122
|||| ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 770 GCCAAGGTCATTGTCTTTCTTGTTCCGACGTGCGTTGCAGCAGAGTACCTTGAAGACATG 829
Query 1123 GGCAGGTAAAGAGGAGAATGTCAAGGCAGCTCAAGAGGCGTTGTATGTGAGGTGCAAGGC 1182
|||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 830 GGCAGGCATAGAGGAGAATGTGAAGGCAGCTCAAGAGGCGTTGTATGTGAGGTGCAAGGC 889
Query 1183 TAACTCTGAAGCCACACTCGGAACCTACAAGGGTGACGCTAAGCTTGGTGATGGAGCAGC 1242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CAACTCTGAAGCCACACTCGGAACCTACAAGGGTGACGCTAAGCTTGGTGATGGAGCAGC 949
Query 1243 TGAGAGCCTTCACGTGAAG 1261
|||||||||||||||||||
Sbjct 950 TGAGAGCCTTCACGTGAAG 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5