BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52950.1 Length=2142 Score E Sequences producing significant alignments: (Bits) Value Ahg485669 jgi|Araly1|485669|fgenesh2_kg.5__1661__AT3G52950.1 3127 0.0 > Ahg485669 jgi|Araly1|485669|fgenesh2_kg.5__1661__AT3G52950.1 Length=2100 Score = 3127 bits (1693), Expect = 0.0 Identities = 1879/1969 (95%), Gaps = 11/1969 (1%) Strand=Plus/Plus Query 1 GGAAACAGGAACAACCAATGAAAACTCGATAAATGGCTTAACTCAATTGTTAAGAGCCGT 60 ||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||| Sbjct 1 GGAAACAAGAACAACCAATGAAAATTCGATAAATGGCTGAACACAATTGTTAAGAGCCGT 60 Query 61 TTGTTTTTTGGCAACAAAAGTGCTCgaga-gagagaccttgaagaagaaagaagaagaga 119 ||| ||||||||||||||||||||||||| || ||| ||||||||| | |||||||||| Sbjct 61 TTG-TTTTTGGCAACAAAAGTGCTCGAGACGA-AGAGGTTGAAGAAG-AGGAAGAAGAGA 117 Query 120 CGAGTTTGATATCTAAAGGAATCATTTTTGACGGATTTAGGATCTAAGTAAACCCTAGAT 179 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 118 CGAGTTTGATATCTAAAGGAATCATTTTTGACGGATTTAGGATCTAAGAAAACCCTAGAT 177 Query 180 TGACCGAATATGAGTACTCAAGCGACGGGTCCTTCTTCAACATCAGGGAGGAGAAGCAAT 239 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 178 TGATTGAATATGAGTACTCAAGCGACGGGTCCTTCTTCAACATCAGGGAGGAGAAGCACT 237 Query 240 TCTACTGTACGGCGAGGACCACCACCTTCTAAGAAACCAGTACAATCAGAGAATGGAAGT 299 |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 238 TCTAGTGTACGGCGAGGACCACCACCTTCTAAGAAACCAGTCCAATCAGAGAACGGAAGT 297 Query 300 GTTAATGGGAACACCTCAAAACCCAATTCACCTCCTCCTCAACCTCAATCTCAAGCTCCT 359 || ||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||| Sbjct 298 GTCAATGGTAACACCTCTAAACCCAATTCACCTCCTCCGCAACCTCCATCTCAAGCTCCT 357 Query 360 TCTAATGGAGAGAGAACAGTGAAGAAGCTTAGGTTATCGAAAGCTCTTACTATTCCTGAA 419 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 358 TCTAATGGAGAGAGAACAGTGAAGAAGCTTCGGTTATCGAAAGCTCTCACTATTCCTGAA 417 Query 420 GGAACTACTGTTTTCGATGCTTGTCGAAGAATGGCTGCTAGGCGTGTTGATGCTTGTTTG 479 ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| Sbjct 418 GGAACTACTGTTTTCGATGCTTGTCGAAGGATGGCGGCTCGGCGTGTTGATGCTTGTTTG 477 Query 480 TTGACTGATTCAAGTGCGCTTCTTTCCGGGATTGTTACTGATAAAGATGTAGCTACAAGA 539 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 478 TTGACTGATTCAAGTGCGCTTCTTTCCGGGATTGTTACTGATAAAGATGTTGCTACAAGA 537 Query 540 GTGATTGCTGAAGGGTTGAGACCGGATCAAACTTTGGTCTCTAAGGTTATGACTAGGAAT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GTGATTGCTGAAGGGTTGAGACCGGATCAAACTTTGGTCTCTAAGGTTATGACTAGGAAT 597 Query 600 CCTATTTTTGTTACTTCTGATTCGTTGGCGCTTGAGGCTCTTCAGAAGATGGTTCAAGGG 659 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 CCTATTTTTGTCACGTCTGATTCGTTGGCGCTTGAGGCTCTTCAGAAGATGGTTCAAGGG 657 Query 660 AAGTTTAGACACTTGCCTGTTGTGGAGAATGGTGAAGTCATTGCTTTGTTGGATATTACA 719 || ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 658 AAATTTAGGCACTTGCCTGTTGTAGAGAATGGTGAAGTCATTGCTTTGTTGGATATTACA 717 Query 720 AAGTGTTTGTATGATGCTATTTCTAGGATGGAGAAAGCTGCAGAGCAAGGTAGTGCTTTA 779 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 718 AAGTGTTTGTATGATGCTATTTCTAGGATGGAGAAAGCTGCAGAGCAAGGCAGTGCTTTA 777 Query 780 GCTGCTGCAGTGGAAGGTGTGGAGAAGCAATGGGGAAGCGGATATTCTGCACCGTATGCT 839 || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 778 GCAGCTGCAGTGGAAGGTGTGGAGAAGCAATGGGGAAGCGGATATTCTGCGCCCTATGCT 837 Query 840 TTCATTGAAACCTTGAGGGAGAGAATGTTTAAACCCGCCTTGTCAACGATTATTACAGAC 899 |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 838 TTCATTGAAACCTTGAGGGAGAGAATGTTTAAGCCCGCCTTGTCAACGATTATCACAGAA 897 Query 900 AATTCGAAGGTTGCACTTGTAGCACCATCAGATCCTGTTTCAGTTGCTGCGAAAAGGATG 959 ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 898 AATTCAAAGGTTGCACTTGTAGCACCATCAGATCCTGTTAGTGTTGCTGCGAAACGGATG 957 Query 960 AGGGATTTGCGGGTTAACTCTGTAATCATTTCCACGGGGAACAAAAT-CAGTGGAATCTT 1018 | |||||||||||||||||||| |||||||||| ||||||||| || || ||||||||| Sbjct 958 CGAGATTTGCGGGTTAACTCTGTTATCATTTCCATGGGGAACAAGATCCA-TGGAATCTT 1016 Query 1019 GACTTCAAAGGACATTCTGATGCGAGTGGTGGCACAAAATTTATCTCCTGAATTGACTCT 1078 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1017 GACTTCAAAGGACATTCTGATGCGAGTGGTGGCACAAAATTTACCTCCTGAATTGACTCT 1076 Query 1079 TGTCGAGAAGGTAATGACACCGAATCCTGAATGTGCATCGCTAGAGACAACGATTCTGGA 1138 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 TGTTGAGAAGGTAATGACACCGAATCCTGAATGTGCATCGCTAGAGACAACGATTCTGGA 1136 Query 1139 TGCGTTGCATACAATGCATGATGGAAAGTTTCTACATCTTCCAATTATAGATAAAGATGG 1198 ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1137 TGCGTTGCATATAATGCATGATGGGAAGTTTCTACATCTTCCAATTATAGATAAAGACGG 1196 Query 1199 ATCAGCTGCAGCTTGTGTAGACGTTCTTCAGATTACTCACGCAGCTATTTCAATGGTGGA 1258 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1197 ATCAGCTGCAGCTTGTGTAGACGTTCTTCAGATTACTCACGCAGCTATTTCAATGGTCGA 1256 Query 1259 GAACAGTTCTGGAGCTGTAAATGATATGGCAAACACGATGATGCAGAAATTTTGGGATTC 1318 |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| Sbjct 1257 GAACAGTTCTGGAGCTGTGAATGATATGGCGAACACGATGATGCAGAAATTCTGGGATTC 1316 Query 1319 AGCTCTTGCGTTAGAGCCACCTGATGATTCTGACACTCAAAGTGAAATGTCGGCAATGAT 1378 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1317 AGCTCTTGCGTTAGAGCCACCAGATGATTCTGACACTCAAAGTGAAATGTCGGCAATGAT 1376 Query 1379 GCATCATTCAGATATAGGGAAGCTCAGTTCTTACCCATCTCTAGGACTAGGGAATTCGTT 1438 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1377 GCATCATTCAGATATAGGGAAGCTCAGTTCTTACCCATCTCTAGGACTCGGGAATTCATT 1436 Query 1439 TTCGTTCAAATTTGAAGACCTTAAGGGCCGTGTACATCGGTTTACTTCTGGAGCTGAAAA 1498 ||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1437 TTCATTCAAATTCGAAGACCTTAAGGGCCGTGTACATCGGTTTACTTCCGCAGCTGAAAA 1496 Query 1499 CCTCGAAGAGCTGATGGGTATTGTGATGCAAAGAATTGGCAGCGACAATAACAATGTGGA 1558 |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1497 CCTCGAAGAGCTGATGGGTATTGTGATGCAAAGAATTGGCAGCGACAACAATGATGTGGA 1556 Query 1559 ACAACGGCCTCAGATTATATATGAGGACGATGAAGGTGATAAGGTTTTGATTACATCGGA 1618 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1557 ACAACGGCCTCAGATTATATATGAGGACGATGAAGGTGATAAGGTATTGATTACATCGGA 1616 Query 1619 TAGCGATTTGGTTGGTGCTGTTACTCTTGCTAGGTCTACAGGACAAAAGGTTTTGAGGCT 1678 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1617 CAGCGATTTGGTTGGTGCTGTTACTCTTGCTAGATCTACAGGACAAAAGGTTTTGAGGCT 1676 Query 1679 GCATCTGGACTTCACTGAGTCAACAAGGAGCTTGAGCTCAGAAACCACCCAACTCAAGAA 1738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 GCATCTGGACTTCACTGAGTCAACAAGGAGCTTGAGCTCAGAAACCACCCAACTCAAGAA 1736 Query 1739 AGGTGATTCTCGAGACAGAGGAAGCGGATGGGTTTCATGGCGTGGTGGTGTGGTGGTTAC 1798 ||| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1737 AGGGGATTCTAGAGATAAAGGAAGCGGATGGGTTTCATGGCGTGGTGGTGTGGTGGTTAC 1796 Query 1799 AGGAGCTGTTGTCCTAACAAGCATAGCCATAGTTGTTTACTTGAAGCGTTCAAAGAACTG 1858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1797 AGGAGCTGTTGTCCTAACAAGCATAGCCATAGTTGTTTACTTGAAGCGTTCAAAGATCTG 1856 Query 1859 ATTTTTGCTGAAGCAAACTGTTTGGGATGCAGAACAAAAACTCTTTTTCTCTTAATTTTT 1918 ||||||||||||||||||||||| ||| ||||||||||| || ||||||| || ||||| Sbjct 1857 ATTTTTGCTGAAGCAAACTGTTTTGGAGGCAGAACAAAA-CTTTTTTTCT-TTG-TTTTT 1913 Query 1919 TGGTAAGTTTCATACAGTTTGTCTCTT--GTCTTTTGGGGTCACATGTT 1965 ||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1914 TGGTAAGTTTCATACAGTTTGTCTCTTTTGTCTTTTGGGGTTACATGTT 1962 Score = 187 bits (101), Expect = 3e-46 Identities = 128/141 (91%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 2000 TTGTTTCCCTATGATATTAAATTAATGGGGAAAAACCTTATTCAGATTACTCTATTTGAC 2059 |||| |||| | ||||||||||||| ||||||||||| ||||||||||| || ||||||| Sbjct 1961 TTGTGTCCCAAAGATATTAAATTAAAGGGGAAAAACCCTATTCAGATTAGTCAATTTGAC 2020 Query 2060 AGAGTTTATGTAAAACCTCTGAAACCGGGAAAATAAATCAAGGGAATATCATTGCACTGC 2119 ||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||| | Sbjct 2021 AGAGTTTATGTAAAACCTCTGAAACCGAGAAAATAAAACCAGG-AATATCATTGCACTAC 2079 Query 2120 AGATTCTGGTCTTTGATATAA 2140 |||||||||| |||||||||| Sbjct 2080 AGATTCTGGTATTTGATATAA 2100 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80598958420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5