BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G52960.1 Length=952 Score E Sequences producing significant alignments: (Bits) Value Ahg485670 jgi|Araly1|485670|fgenesh2_kg.5__1662__AT3G52960.1 1205 0.0 > Ahg485670 jgi|Araly1|485670|fgenesh2_kg.5__1662__AT3G52960.1 Length=825 Score = 1205 bits (652), Expect = 0.0 Identities = 792/854 (93%), Gaps = 31/854 (4%) Strand=Plus/Plus Query 14 TTCACCTAAACAGCATC-AATGGCGACTTCTCTCTCCGTTTCTAGATTCATGTCCTCCTC 72 ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| Sbjct 1 TTCACCTAAACAGCATCAAATGGCGACTTCTCTCTCCGTTTCTAGATTCA--T-CTCCTC 57 Query 73 CGCCACCGTTATCTCCGTCGCTAAGCCGTTACTTTCCCCCACCGTATCCTTCACCGCGCC 132 | || ||| || |||||||||||||||| ||||||||||| |||||||||||||| Sbjct 58 CTCCTCCG------CCATCGCTAAGCCGTTACTATCCCCCACCGTCTCCTTCACCGCGCC 111 Query 133 GCTCTCCTTCACACGCTCTCTCGCTCCTAATCTCTCTCTCAAATTCCGCAACCGCCGCAC 192 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 112 GCTCTCCTTCACACGCTCTCTCGCTCCTAATCTCTCCCTCAAATTCCGCAACCGCCGCAC 171 Query 193 CAATTCCGCCTCCGCCACCACCAGATCCTTCGCTACGACACCCGTCACCGCCTCCATTTC 252 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 172 CAATTCCGCCTCCGCCACCACCAGATCCTTCGCCACAACACCCGTCACCGCCTCCATTTC 231 Query 253 CGTCGGAGACAAGCTCCCAGACTCCACTCTCTCCTACCTCGATCCATCCACCGGAGACGT 312 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 232 CGTCGGAGACAAGCTCCCAGACTCCACCCTCTCCTACCTCGATCCATCCACCGGAGACGT 291 Query 313 CAAAACAGTAACCGTCTCATCCCTAACCGCCGGGAAGAAAACAATCCTATTCGCCGTTCC 372 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 292 CAAAACCGTAACCGTCTCATCCCTAACCGCCGGAAAGAAAACAATCCTATTCGCCGTACC 351 Query 373 CGGCGCATTCACACCAACATGCTCACAAAAACACGTCCCTGGATTCGTATCCAAAGCCGG 432 ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 352 CGGAGCATTCACACCAACCTGCTCACAAAAACACGTCCCTGGATTCGTATCCAAAGCTGG 411 Query 433 AGAACTCAGATCTAAAGGCATCGATGTAATCGCATGTATCTCCGTCAACGACGCGTTCGT 492 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 412 AGAACTCAGATCTAAAGGCATCGATGTAATCGCATGTATCTCCGTCAACGACGCGTTTGT 471 Query 493 GATGGAAGCGTGGAGGAAAGATCTTGGAATTAACGATGAGGTAATGTTGCTATCCGATGG 552 ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 472 CATGGAAGCGTGGAGGAAAGATCTCGGAATCAACGATGAGGTAATGTTGCTTTCCGATGG 531 Query 553 AAATGGCGAATTCACAGGGAAGCTTGGTGTTGAATTGGATTTGAGGGATAAGCCTGTGGG 612 || || |||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 532 TAACGGTGAATTCACAGGGAAGCTTGGAGTTGAATTGGATTTGAGGGATAAGCCTGTAGG 591 Query 613 ACTTGGAGTTAGGTCAAGGAGATATGCGATTTTGGCTGATGATGGTGTTGTGAAAGTTCT 672 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 592 ACTTGGAGTTAGGTCAAGAAGATATGCGATATTGGCTGATGATGGTGTTGTGAAAGTTCT 651 Query 673 GAATCTTGAAGAAGGAGGTGCTTTTACTAATAGTAGTGCTGAGGATATGCTTAAAGCTCT 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 GAATCTTGAAGAAGGAGGTGCTTTTACTAATAGTAGTGCTGAGGATATGCTTAAAGCTCT 711 Query 733 CTGATTCTTATGATTTTCTCATCAATTTCGTCT-TCTTCTCTGTTTTGAATTTTCTTTAC 791 ||||||||| | || || || || | ||| | ||| | |||| |||| ||| Sbjct 712 CTGATTCTT-TC-TT--CT--TC--TT-C-TCTGT-TTCGAT-TTTT---TTTT-TTT-- 753 Query 792 TCTGTTTTGTGTTGCTGTTTCTTTAAATCTACGAATCATTATCGGATTTGTAATGGAATA 851 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 754 T-TGTTTTGTGTTGCTGTTTCTTTAAATCTACGAATCAT-ATCGGATTTGTAATGGAATA 811 Query 852 ATGAAGTTAGAGGT 865 ||||| |||||||| Sbjct 812 ATGAATTTAGAGGT 825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35339944059 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5