BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53130.1
Length=3341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485688 jgi|Araly1|485688|fgenesh2_kg.5__1680__AT3G53130.1 2468 0.0
> Ahg485688 jgi|Araly1|485688|fgenesh2_kg.5__1680__AT3G53130.1
Length=3121
Score = 2468 bits (1336), Expect = 0.0
Identities = 1623/1756 (92%), Gaps = 42/1756 (2%)
Strand=Plus/Plus
Query 15 CACGGAAGCTTCGAAAAGAGGTCATCAATGGAGtcttcactcttttctccatcttcctct 74
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACCGAAGCTTCGAAAAGAGGTCATCAATGGAGTCTTCACTCTTTTCTCCATCTTCCTCT 60
Query 75 tcttactcttctctcttcACTGCAAAACCTACGCGTCTTTTATCACCAAAACCCAAATTC 134
|||||||||||||| |||||| | ||| |||||||| || | | | |||| || | |
Sbjct 61 TCTTACTCTTCTCTATTCACTCCGAAATCTACGCGT-TTCTCT-ATCAAATCC----T-C 113
Query 135 ACATTCTCCATCAGATCCTCCATTGAGAAACCCAAACCCAAACTCGAGACCAATTCATCG 194
|||| || || || || ||||||||||||||| |||||||||||
Sbjct 114 -CATT--------GA---------GA-AA-CCTAAACCCAAACTCGAGGCCAATTCATCG 153
Query 195 AAATCCCAATCATGGGTCAGTCCCGATTGGCTCACAACACTCACTCGTACCCTTTCCTCA 254
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 154 AAATCGCAGTCATGGGTCAGTCCCGATTGGCTCACATCACTCACTCGTACCCTTTCCTCA 213
Query 255 GGAAAAAACGACGAGTCAGGTATACCAATCGCGAACGCGAAGCTCGACGATGTCGCTGAT 314
||| |||||||||| || || |||||||||||||||||||||||||| || ||| ||||
Sbjct 214 GGACAAAACGACGATTCGGGCATACCAATCGCGAACGCGAAGCTCGAAGACGTCACTGAC 273
Query 315 CTCCTCGGAGGTGCTCTCTTCTTACCTCTCTACAAATGGATGAATGAGTACGGACCCATT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 CTCCTCGGAGGTGCTCTCTTCTTACCTCTCTACAAATGGATGAATGAGTACGGACCCATT 333
Query 375 TACCGTCTCGCTGCTGGTCCTCGTAATTTCGTAATTGTGAGCGACCCAGCGATAGCTAAA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 334 TACCGTCTCGCTGCTGGTCCTCGTAATTTCGTAATTGTGAGCGACCCAGCGATCGCTAAA 393
Query 435 CATGTTTTGAGGAATTATCCAAAGTACGCTAAAGGCTTAGTCGCTGAAGTCTCTGAATTT 494
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CACGTTTTGAGGAATTATCCAAAGTACGCTAAAGGCTTAGTCGCTGAAGTCTCTGAATTT 453
Query 495 CTATTTGGTTCGGGTTTCGCTATCGCTGAAGGACCTCTTTGGACAGCGAGGCGTAGAGCG 554
||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||
Sbjct 454 CTATTCGGTTCGGGTTTCGCAATCGCTGAAGGGCCTCTTTGGACGGCGAGGCGGAGAGCG 513
Query 555 GTGGTTCCATCGCTTCACAGGAGGTATTTGTCTGTGATTGTGGAGAGAGTATTCTGCAAA 614
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 514 GTGGTTCCGTCGCTTCACAAGAGGTATTTGTCTGTGATTGTGGAGAGAGTATTCTGTGAA 573
Query 615 TGTGCAGAGAGGCTTGTTGAGAAGTTGCAGCCTTATGCAGAAGACGGAAGTGCTGTGAAT 674
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 574 TGTGCAGAGAGGCTTGTTGAGAAGTTGCAGCCTTATGCAGAAGACGGAAATGCTGTGAAC 633
Query 675 ATGGAAGCGAAGTTCTCTCAGATGACACTTGATGTCATTGGGTTGTCTCTTTTTAACTAC 734
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 634 ATGGAAGAGAAGTTCTCTCAGATGACACTTGACGTCATTGGCTTGTCTCTTTTTAACTAC 693
Query 735 AATTTCGATTCTTTGACTACTGATAGTCCTGTCATTGAAGCTGTTTACACTGCTCTTAAA 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AATTTCGATTCTTTGACTACTGATAGTCCTGTCATTGAAGCTGTTTACACTGCTCTTAAA 753
Query 795 GAAGCTGAGCTTCGTTCTACTGATCTTCTGCCATATTGGAAGATCGATGCATTGTGTAAG 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 754 GAAGCTGAGCTTCGTTCTACTGATCTTCTACCATATTGGAAGATCGATGCATTGTGTAAG 813
Query 855 ATAGTCCCGAGACAGGTGAAAGCTGAAAAGGCTGTAACTTTGATAAGGGAAACTGTTGAA 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 ATAGTCCCGAGACAGGTGAAAGCTGAAAAGGCTGTAACTTTGATAAGGGAAACTGTTGAA 873
Query 915 GACCTTATTGCTAAGTGTAAAGAAATTGTCGAAAGAGAAGGCGAAAGAATCAATGATGAG 974
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 874 GACCTCATTGCTAAGTGCAAAGAAATTGTTGAAAGAGAAGGCGAAAGAATCAATGATGAG 933
Query 975 GAGTATGTAAATGATGCTGACCCAAGTATCCTGCGTTTCTTGCTTGCAAGCAGAGAAGAG 1034
||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct 934 GAGTATGTAAATGATGCTGACCCAAGTATACTTCGTTTCTTGCTCGCGAGCAGAGAAGAG 993
Query 1035 GTATCAAGTGTGCAGTTACGGGATGATCTTCTCTCAATGCTCGTAGCGGGTCATGAAACC 1094
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 994 GTATCAAGTGTGCAGTTACGAGATGATCTTCTCTCAATGCTTGTCGCGGGTCATGAAACC 1053
Query 1095 ACTGGATCTGTCCTCACTTGGACACTTTATCTCCTAAGTAAGAACTCATCTGCATTAAG- 1153
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1054 ACTGGATCTGTCCTTACTTGGACACTTTATCTCCTAAGTAAGAACTCATCTGCATTG-GC 1112
Query 1154 GAAAGCACAAGAAGAAGTAGACAGAGTGTTAGAAGGAAGAAACCCGGCTT-TCGAGGATA 1212
|||||| |||||||||||||||||||| |||| |||||||| ||||||| | |||||||
Sbjct 1113 GAAAGCCCAAGAAGAAGTAGACAGAGTTTTAGCCGGAAGAAAACCGGCTTAT-GAGGATA 1171
Query 1213 TAAAGGAGTTGAAGTACATCACTCGTTGTATAAACGAGTCAATGCGTCTCTATCCTCATC 1272
||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
Sbjct 1172 TAAAGGAGTTGAAGTACATTACTCGTTGTATAAACGAGTCCATGCGTCTCTACCCTCACC 1231
Query 1273 CTCCTGT------CTTGATAAGAAGAGCTCAAGTTCCTGACATTCTTCCTGGGAACTATA 1326
||||||| | |||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1232 CTCCTGTAAGAAACCTGATTAGAAGAGCTCAAGTTCCTGACATTCTTCCTGGGAACTACA 1291
Query 1327 AGGTCAATACCGGACAAGACATTATGATTTCAGTCTATAACATCCATCGTTCTTCCGAGG 1386
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1292 AGGTTAATACCGGACAAGACATTATGATTTCGGTCTATAACATCCATCGTTCTTCCGAGG 1351
Query 1387 TATGGGAAAAAGCTGAGGAATTTCTGCCTGAACGATTCGACATAGATGGCGCAATCCCTA 1446
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1352 TATGGGAAAAAGCCGAGGAATTTCTTCCTGAACGATTCGACATAGAAGGCGCAATCCCTA 1411
Query 1447 ACGAAACAAACACTGATTTCAAATTCATCCCATTCAGTGGAGGGCCTAGAAAATGTGTAG 1506
| ||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1412 ATGAAACGAACACCGATTTCAAATTCATACCGTTCAGTGGAGGGCCTAGAAAATGTGTAG 1471
Query 1507 GCGATCAGTTTGCATTGATGGAGGCAATTGTGGCACTCGCGGTGTTTCTTCAGCGGTTAA 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 GCGATCAGTTTGCATTGATGGAGGCAATTGTGGCACTCGCGGTGTTTCTTCAGCGGTTAA 1531
Query 1567 ACGTTGAGCTGGTTCCTGATCAGACCATTAGCATGACCACAGGAGCAACCATACACACCA 1626
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1532 ACGTCGAGCTGGTTCCTGATCAGACCATTAGCATGACCACTGGAGCAACAATACACACCA 1591
Query 1627 CCAATGGATTGTATATGAAGGTGAGCCAAAGGTAAAAACCAGAATTTATGTTTTCATGAT 1686
|||||||||||||||||||||| |||| |||||||| ||||||||| |||| ||| ||
Sbjct 1592 CCAATGGATTGTATATGAAGGTTAGCCTAAGGTAAAG-CCAGAATTTTTGTTACCATCAT 1650
Query 1687 AATTGATTGGTGTGAATGGACTTGTTTCATAGTA--C-TCTTGAGAAATAACCACaaaaa 1743
|||||||||||| ||||||||||||||||| || | |||||||||||||| ||||||
Sbjct 1651 GATTGATTGGTGTTAATGGACTTGTTTCATACTAGTCCTCTTGAGAAATAACGTCAAAAA 1710
Query 1744 aaTGAATTAT-GGAAA 1758
| || | ||| |||||
Sbjct 1711 ATTGTACTATCGGAAA 1726
Score = 1910 bits (1034), Expect = 0.0
Identities = 1255/1358 (92%), Gaps = 30/1358 (2%)
Strand=Plus/Plus
Query 1995 TAAAACCATATAAAACCAATACTAGTGGGTTCTATAGCGATGTGTAGTTTCACTTTCACG 2054
|||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1783 TAAAACCATA-AAAACCAATACTAGT-GGTTCTATAGCGAAGTGTAGTTTCACTTTCACG 1840
Query 2055 TACGAGGAAGAT---TaaaaaaaaTGGAGAACGAAAGCTCAGAGAGTAGAAACAGAGCTC 2111
|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1841 TACGAGGAAGATAGAAAAAAAAAATGGAGAACGAAAGCTCAGAGACTAGGAACAGAGCTC 1900
Query 2112 GTCTTGCCATTATGGAGCTTGCTAACATGATTAGCGTTCCCATGTCTCTCAATGCCGCCG 2171
||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1901 GTCTTGCCATTATGGAGCTCGCTAACATGATCAGCGTTCCCATGTCACTCAACGCCGCCG 1960
Query 2172 TGCGACTAGGCATTGCCGACGCCATTTGGAACGGC-GGAGCCAATTCTCCTCTCTCTGCC 2230
|||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 1961 TGCGGTTAGGCATTGCCGACGCCATTTGGAACGGCGGGA-CCAATTCTCCTCTCTCAGCC 2019
Query 2231 GCCGAGATCCTCCCTCGCCTCCACCTAC-CATCTCACACTACCATTGGTGGCGACCCCGA 2289
|||||||||||||||||||||| | | ||||| ||||||||||||| ||||| |||||
Sbjct 2020 GCCGAGATCCTCCCTCGCCTCC-TTTTCGCATCTGACACTACCATTGGCGGCGATCCCGA 2078
Query 2290 GAATCTTCAGCGTATACTTCGGATGCTCACCAGCTACGGTGTCTTCTCCGAACACCTTGT 2349
|||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 2079 GAATCTCCAACGTATACTTCGGATGCTTACTAGCTACGGTGTCTTCTCCGAACACCTTGT 2138
Query 2350 TGGATCCATTGAGAGGAAATACTCTCTTACGGACGTCGGAAAAACTCTTGTAACCGACTC 2409
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2139 CGGATCCATCGAGAGGAAATACTCTCTTACGGACGTCGGAAAAACTCTTGTCACCGACTC 2198
Query 2410 CGGCGGCCTCTCTTACGCTGCCTACGTCCTCCAACATCACCAGGAGGCGTTGATGCGAGC 2469
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2199 AGGCGGCCTCTCTTATGCCGCCTACGTCCTCCAACATCACCAGGAGGCGTTGATGCGAGC 2258
Query 2470 ATGGCCACTAGTTCACACGGCAGTGGTGGAGCCGGAGACAGAGCCGTACGTGAAAGCAAA 2529
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2259 ATGGCCACTAGTTCACACGGCGGTGGTGGAGCCGGAGACAGAGCCGTACGTGAAAGCTAA 2318
Query 2530 CGGCGAGGCGGCATACGCTCAGTATGGGAAAAGTGAGGAGATGAATGGTCTAATGCAAAA 2589
|||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 2319 CGGCGAGGCGGCTTACGCTCAGTATGGGAAAAGTGAAGAGATGAACGGTCTGATGCAAAA 2378
Query 2590 GGCAATGTCTGGCGTATCTGTACCGTTCATGAAAGCTATATTAGACGGCTACGATGGGTT 2649
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2379 GGCAATGTCTGGGGTATCTGTGCCGTTCATGAAAGCTATATTGGACGGCTACGATGGGTT 2438
Query 2650 TAAATCAGTGGATATTTTGGTTGACGTAGGAGGTAGTGCAGGGGATTGTCTGCGTATGAT 2709
|||||| || |||| ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2439 TAAATCCGTTGATAATTTGGTTGACGTAGGAGGTAGTGCAGGAGATTGTCTCCGTATGAT 2498
Query 2710 CCTTCAA-CAATTTCCTAACGTCCGTGAAGGGATTAATTTCGATTTACCTGAAGTTGTTG 2768
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2499 CCTT-AACCAATTTCCTAACGTCCGTGAAGGGATTAATTTCGATTTACCTGAAGTTGTTG 2557
Query 2769 CCAAAGCCCCCAATATTCCTGGAGTGACTCACGTGGGTGGGGATATGTTCCAATCAGTTC 2828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2558 CCAAAGCCCCCAATATTCCTGGAGTGACTCACGTGGGTGGGGATATGTTCCAATCAGTTC 2617
Query 2829 CTAGCGCTGACGCTATCTTCATGAAGTGGGTGTTAACGACATGGACGGATGAAGAATGCA 2888
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2618 CAAGCGCTGACGCAATCTTCATGAAGTGGGTGTTAACGACATGGACGGATGAAGAATGCA 2677
Query 2889 AGCAGATAATGAAGAATTGCTACAACGCGTTACCAGTTGGAGGAAAGCTGATTGCGTGTG 2948
||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 2678 AGCAGATAATGAAGAATTGCTACAAAGCATTACCGGTTGGAGGAAAGCTAATTGCGTGTG 2737
Query 2949 AGCCGGTCTTGCCTAAGGAAACCGATGAAAGTCACCGGACTCGTGCCTTGTTAGAAGGTG 3008
|||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 2738 AGCCTGTCTTGCCTAAGGAAACCGATGATAGCCACCGAACTCGTGCCTTGTTAGAAGGCG 2797
Query 3009 ACATCTTTGTCATGACCATCTATAGAACCAAAGGTAAGCATAGAACCGAAGAAGAGTTTA 3068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2798 ACATCTTTGTCATGACCATCTATAGAACCAAAGGTAAGCATAGAACCGAAGAAGAGTTTA 2857
Query 3069 TAGAGCTTGGTCTCTCCGCGGGATTCCCTACTTTTCGACCTTTCTACATTGATTACTTCT 3128
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2858 AAGAGCTTGGTCTCTCTGCGGGATTCCCTACTTTTCGACCTTTCTACATCGATTACTTCT 2917
Query 3129 ACACCATCTTAGAGTTTCAGAAGTAATA-T-TCAA-GCATTTTTCTTCTCATATTTCTAA 3185
||||||||||||||||||||||||| || | | || |||||| |||||| |||||||||
Sbjct 2918 ACACCATCTTAGAGTTTCAGAAGTAGTACTGTTAAAGCATTTATCTTCTGATATTTCTAG 2977
Query 3186 AAGCTTCAAAATAA-TGAATCAAAAGACCTCTTTGTTAATTGAGTTGAGATATCTAGTGA 3244
| ||||| || ||| | ||||||||||||| | || | | ||||||| |||| |||
Sbjct 2978 ATGCTTCGAA-TAAATTAATCAAAAGACCTAGCTCTT--T-G--TTGAGATCTCTAATGA 3031
Query 3245 AGACATTAATAT-TTTCATCAAGATGTAATAATCTAAAGTCTATATTCTAAGTGCATCCT 3303
| |||||||||| ||| ||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 3032 ATACATTAATATCTTT-ATCAAGATGTAATCATCTAAAGTCTAT-TTCTAAGTGCATCCT 3089
Query 3304 TAAAAGGCATTTTCCATATATATAAGTTTCATCTTTCG 3341
|||| |||||| | | | |||||||||||||||||
Sbjct 3090 TAAA-GGCATTGT---T-TC-ATAAGTTTCATCTTTCG 3121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126122796922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5