BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53410.1 Length=1178 Score E Sequences producing significant alignments: (Bits) Value Ahg938241 jgi|Araly1|938241|scaffold_502432.1 1306 0.0 > Ahg938241 jgi|Araly1|938241|scaffold_502432.1 Length=952 Score = 1306 bits (707), Expect = 0.0 Identities = 876/956 (92%), Gaps = 17/956 (2%) Strand=Plus/Plus Query 35 CAATTTCGCAAAGTTGGATCATGGGCAATGTCATAAGCGGTGGAAGCCGCCCGGAAAATC 94 ||||||||||||| ||||||||||||||| ||||||||||||| |||||||| || ||| Sbjct 1 CAATTTCGCAAAGGTGGATCATGGGCAATTTCATAAGCGGTGGTAGCCGCCCCCAATATC 60 Query 95 ATCGGGACCGTAC-TTCGCCGCCGTATCCAAACCCTAATGCTCAGTACCAAGGCAATTAT 153 | || |||| | | ||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 61 ACCGAGACCAT-CAATCGCCGCCGCCTCCAAACCCTAATCCTCAGTTCGAAGGCAATTAT 119 Query 154 CCGTCGCCGT------A-C--CAAGATTGTGCTAGGTATCCGTATGGAGAGATGGCGTCT 204 || | ||||| | | |||||||||||||||||||| ||||| |||||||||||| Sbjct 120 CCTTTGCCGTACCACCACCAACAAGATTGTGCTAGGTATCCTTATGGGGAGATGGCGTCT 179 Query 205 CCAGTGCAATACGTAGAGCATCAGGAAGCAGTGACTATAAGGAACGACATCAATCTGAAG 264 || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 180 CCGGTGCAATACGTAGAGCACCAGGAAGCAGTGACTATAAGGAACGACATCAATTTGAAG 239 Query 265 AAAGAAACTTTGAGACTTGAGCCTGATGAACAGAACCCTGGCAAGTTTTTGCTCTCCTTC 324 |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 240 AAAGAAACCTTGAGATTTGAGCCTGATGAACAAAACCCTGGCAAGTTTTTGCTCTCCTTC 299 Query 325 ACTTTTGACGCCTCTGTTCCTGGAAGCATCACTGTAATGTTCTTTGCTAAAGAAGGCAAA 384 |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 300 ACTTTTAACGCCTCTGTTCCTGGAAGCATCTCTGTGATGTTCTTTGCTAAAGAAGGCAAA 359 Query 385 GACTGTAACCTTATTGCGACAAAGGAGGATCTTTTTCCATCCACTCA-AGTTAGTTTTGC 443 || |||||| ||| |||||||||||||||||| ||||||||||| | ||||||||||| Sbjct 360 GAGTGTAACTTTAATGCGACAAAGGAGGATCTGTTTCCATCCAC-GACTGTTAGTTTTGC 418 Query 444 AAAAGGTCTGGAACAGAGATTCAAGCAGGCTTGTGGGACAGGGATTGATTTCTCAGATAT 503 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | | Sbjct 419 AAAAGGTATGGAACAGAGATTCAAGCAGGCTTGTGGAACAGGGATTGATTTCTCAGCTTT 478 Query 504 GTCAGAGG-CAGATTTGGTTGAGGCAAACGAGACAGATGTGTATCATGTGGCAGTGAAAG 562 ||||| || |||||||||||||||||| |||||||||||| |||||||||||||||| || Sbjct 479 GTCAG-GGACAGATTTGGTTGAGGCAAGCGAGACAGATGTTTATCATGTGGCAGTGATAG 537 Query 563 CAGAGGTAGTATCAGAAGATGATCATCCTGAGTCTGGGACACCAAACAGACAGATAACTC 622 |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| Sbjct 538 CAGAGGTAGTATCAGAAGATGATCATTCTGAGTCTGAGACACTAAACAGACAGATAACTC 597 Query 623 ATGTGGTTTTAGAGAAAGATCATAAGGGTGAGTACAAGGCGAGAGTGGTGAAGCAGATCC 682 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 598 ATGTGGTTTTAGAGAAAGATCATAAGGGTGAATACAAGGCGAGAGTGGTCAAGCAGATCC 657 Query 683 TGTGGGTGAATGGGAATAGGTATGTTCTTCAAGAGATTTATGGGATTGGTAATACAGTTG 742 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 658 TGTGGGTGAATGGGAAAAGGTATGTTCTTCAAGAGATTTATGGGATTGGTAGTACAGTTG 717 Query 743 ATGATAATGGAGAAGATGCGAATGAAAGAGGAAAAGAATGCGTCATCTGCTTATCTGAGC 802 |||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct 718 ATGATAATGGAGAAGATGCGAACGAGAGAGGAAAAGAATGTGTCATCTGCTTATCGGAGC 777 Query 803 CACGGGATACCACTGTTCTCCCTTGCAGGCACATGTGTATGTGTAGCGGTTGTGCAAAGC 862 |||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 778 CACGAGACACTACTGTTCTCCCATGCAGGCACATGTGTATGTGTAGCGGTTGTGCAAAGC 837 Query 863 TTTTGAGGTTTCAGACAAACCTCTGCCCCATCTGTAGACAACCGGTGGATAGGCTTTTGG 922 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 838 TTTTGAGGTTTCAGACAAACCTCTGTCCCATCTGTAGACAACCGGTGGATAGGCTTTTGG 897 Query 923 AGATAACAGTGAACAACA-ACGACAGGAACTAGTGAGCCTTGCTACGTTACTCTTC 977 |||||||||| |||| | | ||||||||| ||||||| |||||||||| |||||| Sbjct 898 AGATAACAGTCAACA-CTGATGACAGGAACCAGTGAGCTTTGCTACGTTGCTCTTC 952 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43955723301 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5