BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53450.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348439 jgi|Araly1|348439|fgenesh1_pg.C_scaffold_5001831 1109 0.0
Ahg482713 jgi|Araly1|482713|fgenesh2_kg.4__1773__AT2G37210.1 793 0.0
Ahg949598 jgi|Araly1|949598|scaffold_801485.1 215 4e-55
Ahg949979 jgi|Araly1|949979|scaffold_801866.1 174 6e-43
> Ahg348439 jgi|Araly1|348439|fgenesh1_pg.C_scaffold_5001831
Length=651
Score = 1109 bits (600), Expect = 0.0
Identities = 628/642 (98%), Gaps = 0/642 (0%)
Strand=Plus/Plus
Query 7 GTCAACAATGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTTTGTGGAAGC 66
||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 10 GTCAATAGTGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTCTGTGGAAGC 69
Query 67 AGCCAAGGCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACGAATTGGTT 126
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 70 AGCCAAGGCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACAAATTGGTT 129
Query 127 TTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCG 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCA 189
Query 187 CAAGCTGTTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCT 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CAAGCTGTTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCT 249
Query 247 AGAGAGTTGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCATCAAAGA 306
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 250 AGAGAGTTGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGGTATGCATCAAAGA 309
Query 307 AAAGCAGAGATGGCTAGACACTCTGATGCTTTTATTGCTTTACCAGGTGGATATGGAACA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 AAAGCAGAGATGGCTAGACACTCTGATGCTTTTATTGCTTTACCAGGTGGATATGGAACA 369
Query 367 CTTGAAGAGCTTTTGGAGGTCATAACATGGGCTCAGCTTGGAATACATGATAAACCGGTG 426
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 370 CTTGAAGAGCTTTTGGAGGTCATAACATGGGCTCAGCTTGGTATACATGACAAACCGGTG 429
Query 427 GGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTTCATTGATAAAGCCGTT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTTCATTGATAAAGCCGTT 489
Query 487 GAAGAAGGCTTCATCAGTACAAACGCACGCCAGATCATAATTTCTGCACCTACTGCCAAG 546
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 490 GAAGAAGGTTTCATCAGTACGAACGCACGCCAGATCATAATTTCTGCACCTACTGCTAAG 549
Query 547 GAGCTTGTAAAGAAGCTGGAGGAATATTCGCCTTGCCATGAAAGTGTTGCGACTAAGCTT 606
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 550 GAGCTTGTAAAGAAGTTGGAGGAATATTCGCCTTGCCATGAAAGTGTTGCCACTAAGCTT 609
Query 607 TGTTGGGAGATAGAGCGGATTGACTACTCTTCTGAAGACTGA 648
|||||||||||||||||||||| |||||||||||||||||||
Sbjct 610 TGTTGGGAGATAGAGCGGATTGGCTACTCTTCTGAAGACTGA 651
> Ahg482713 jgi|Araly1|482713|fgenesh2_kg.4__1773__AT2G37210.1
Length=1006
Score = 793 bits (429), Expect = 0.0
Identities = 580/653 (89%), Gaps = 10/653 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGTCAACA-ATGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTTTG 59
|||||| |||| | |||||| ||||||||||||||||| ||||||||||||| || ||
Sbjct 95 ATGGAGATCAA-AGGTGAAACGATGCAAAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTG 153
Query 60 TGGAAGCAGCCAAGGCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACGA 119
|||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 154 TGGAGGCAGTCAAGGCAAGAAGAGTAGTTACCAAGATGCTGCTGTTGATCTCGGCAACGA 213
Query 120 ATTGGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTT 179
| |||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 214 ACTGGTTTCAAGGAATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTT 273
Query 180 GGTTTCGCAAGCTGTTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACT 239
|||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||| ||
Sbjct 274 GGTTTCACAAGCTGTTCATGATGGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCT 333
Query 240 CATGCCTAGAGAGTTGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCA 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 334 CATGCCTAGAGAGTTGACTGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCA 393
Query 300 TCAAAGAAAAGCAGAGATGGCTA-GACACTCTGATGCTTTTATTGCTTTACCAGGTGGAT 358
||||| ||||| |||||||||| | |||||||||||||||||||| ||||||||||| |
Sbjct 394 CCAAAGGAAAGCTGAGATGGCTAAG-CACTCTGATGCTTTTATTGCCTTACCAGGTGGTT 452
Query 359 ATGGAACACTTGAAGAGCTT--TTGGAGGTCATAACATGGGCTCAGCTTGGAATACATGA 416
|||||||||||||||| || ||| || ||||||| |||||||||||||| ||||||||
Sbjct 453 ATGGAACACTTGAAGAA-TTGCTTGAAG-TCATAACTTGGGCTCAGCTTGGTATACATGA 510
Query 417 TAAACCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTTCATTGA 476
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 511 CAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATTCATTGA 570
Query 477 TAAAGCCGTTGAAGAAGGCTTCATCAGTACAAACGCACGCCAGATCATAATTTCTGCACC 536
||||| || |||||||| |||||||| | || || || ||||||| | ||| ||||
Sbjct 571 CAAAGCTGTCGAAGAAGGATTCATCAGCCCGAATGCTCGTGAGATCATCGTCTCTTCACC 630
Query 537 TACTGCCAAGGAGCTTGT-AAAGAAGCTGGAGGAATATTCGCCTTGCCATGAAAGTGTTG 595
|||||| || ||||| || ||| ||||| ||||||||| | |||||||||||||||||||
Sbjct 631 TACTGCTAAAGAGCTGGTGAAA-AAGCTAGAGGAATATGCACCTTGCCATGAAAGTGTTG 689
Query 596 CGACTAAGCTTTGTTGGGAGATAGAGCGGATTGACTACTCTTCTGAAGACTGA 648
| |||||||||||||||||||| || ||||||| ||||| |||||||| |||
Sbjct 690 CAACTAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCGTCTGAAGAGTGA 742
> Ahg949598 jgi|Araly1|949598|scaffold_801485.1
Length=464
Score = 215 bits (116), Expect = 4e-55
Identities = 123/126 (98%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 131 GGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCGCAAG 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 140 GGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCACAAG 199
Query 191 CTGTTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCTAGAG 250
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CTGTTCATGATAGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCTAGAG 259
Query 251 AG-TTG 255
|| |||
Sbjct 260 AGGTTG 265
> Ahg949979 jgi|Araly1|949979|scaffold_801866.1
Length=272
Score = 174 bits (94), Expect = 6e-43
Identities = 96/97 (99%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 123 GGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGT 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGT 121
Query 183 TTCGCAAGCTGTTCATGATGGTGGTCGCCATGTTATT 219
||| |||||||||||||||||||||||||||||||||
Sbjct 122 TTCACAAGCTGTTCATGATGGTGGTCGCCATGTTATT 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5