BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53460.4 Length=1599 Score E Sequences producing significant alignments: (Bits) Value Ahg348440 jgi|Araly1|348440|fgenesh1_pg.C_scaffold_5001832 808 0.0 > Ahg348440 jgi|Araly1|348440|fgenesh1_pg.C_scaffold_5001832 Length=1020 Score = 808 bits (437), Expect = 0.0 Identities = 508/541 (94%), Gaps = 9/541 (2%) Strand=Plus/Plus Query 648 TGAATTTGAAGGCAGACCTTTGAGAGTCAATGCTGGCCCTCCTCCACCTAAAAGAGAGGA 707 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 TGAATTTGAAGGCAGACCTTTGAGAGTCAATGCTGGCCCTCCTCCACCTAAAAGAGAGGA 548 Query 708 ATCCTTCTCCAGAGGACCAAGAAGTGGAGGTTACGGTTCTgagcgtggtggaggttacgg 767 ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct 549 ATCCTTCTCCAGAGGACCAAGAAGTGGTGGTTATGGTTCTGAACGTGGTGGAGGCTACGG 608 Query 768 ttccgagcgtggtggtggttatggttccgagcgtggtggtggttatggttccgagcgtgg 827 ||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct 609 TTCTGAGCGTGGTGGTGGTTACGGTTCTGAGCGTGGTGGTGGTTATGGTTCAGAGCGTGG 668 Query 828 tggtggatacggttctcaacgtagtggtggtggttACGGAGGGTCTCAACGTTCCAGTTA 887 |||||||||||| ||||| |||||||||||| | | ||||||||||||||||||||||| Sbjct 669 TGGTGGATACGGGTCTCAGCGTAGTGGTGGT--T-ATGGAGGGTCTCAACGTTCCAGTTA 725 Query 888 TGGTTCGGGGTCAGGGTCCGGTTCGGGCTCAGGTTCAGGAAACCGTCTCTACGTGGGCAA 947 ||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||| Sbjct 726 TGGTTCGGGGTCAGG-T----T-CGGGCTCAGGTTCAGGAAACCGTCTTTACGTGGGCAA 779 Query 948 CCTTTCTTGGGGTGTTGATGACATGGCACTTGAGAACTTGTTTAACGAGCAAGGAAAGGT 1007 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 780 CCTTTCTTGGGGTGTTGATGACATGGCCCTTGAGAACTTGTTTAATGAGCAAGGAAAGGT 839 Query 1008 AGTTGAAGCTAGGGTTATCTACGACAGGGACAGCGGTAGATCCAAGGGTTTTGGATTTGT 1067 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 840 AGTTGAAGCCAGGGTTATCTACGACAGGGACAGCGGTAGATCCAAGGGTTTTGGGTTTGT 899 Query 1068 GACACTTAGCTCTTCCCAAGAGGTTCAGAAGGCGATCAATTCCTTGAATGGAGCAGATTT 1127 |||||| || ||||| ||||||||||| ||||| ||||||||||||||||| || ||||| Sbjct 900 GACACTCAGTTCTTCTCAAGAGGTTCAAAAGGCCATCAATTCCTTGAATGGTGCTGATTT 959 Query 1128 GGATGGAAGACAAATAAGAGTCTCAGAGGCTGAGGCTAGGCCACCAAGAGGCCAATTTTG 1187 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 960 GGATGGAAGACAAATAAGAGTCTCGGAGGCTGAGGCTAGGCCACCAAGAGGCCAATTTTG 1019 Query 1188 A 1188 | Sbjct 1020 A 1020 Score = 773 bits (418), Expect = 0.0 Identities = 466/490 (95%), Gaps = 0/490 (0%) Strand=Plus/Plus Query 97 ATGTCTGCCTCTGCTTCTTCCCTCTCTGCTTTCAATCCTAAATCCCTTCCTCTCTGCGTC 156 |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGTCTGCCTCTGCTTCTTCTCTTTCTGCTTTCAACCCTAAATCCCTTCCTCTCTGCGTC 60 Query 157 TCCAGACCCGCTTCCGTCTCCGTCTTACCTCCTTCCCTCTCCTTCAAACTTCACTCCGAC 216 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 TCCAGGCCAGCTTCCGTCTCCGTCTTACCTCCTTCCCTCTCCTTCAAACTTCATTCCGAC 120 Query 217 CACCTCGTCTCTATCTTCGCTTCCTCCGCCCTCAAATGCTCATCCCCCGCCGAGTACCCG 276 || ||||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||| Sbjct 121 CATCTCGTCTCTCTCTTCGCTTCCTCCGCCGTGAAATGCTCATCCCCCGCCGAGTATCCG 180 Query 277 TCGCGTTTCGTTAGAAACGTTGCTGTATCTTCGGATTTTGAGGTGGAGGAAGATGATATG 336 |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 181 TCGCGTTTTGTTAGAAACGTTGCTGTATCTTCAGATTTCGAGGTGGAGGAAGATGATATG 240 Query 337 TTCGCTGACGGTGACGATTCAGCGCCTGTGGAGCGTAACTCCTTCTCTCCTGACCTTAAG 396 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 241 TTCGCTGACGGTGACGATTCGGCGCCTGTGGAGCGTAACTCCTTCTCTCCTGACCTCAAG 300 Query 397 CTCTTTGTTGGTAACCTTTCTTTTAACGTTGATAGCGCTCAGCTTGCTCAGCTCTTTGAG 456 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTCTTTGTTGGTAACCTTTCCTTTAACGTTGATAGCGCTCAGCTTGCTCAGCTCTTTGAG 360 Query 457 AGCGCTGGAAATGTTGAGATGGTTGAGGTTATCTATGACAAAGTGACTGGCCGGAGCAGG 516 ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 361 AGCGCCGGAAATGTTGAGATGGTTGAGGTAATCTATGACAAAGTGACTGGACGAAGCAGG 420 Query 517 GGTTTCGGATTTGTGACAATGTCAACCGCAGCGGAAGTTGAAGCAGCAGCTCAACAGTTC 576 ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 421 GGTTTCGGATTTGTGACAATGTCTACCGCGGCAGAAGTTGAAGCAGCAGCTCAACAGTTC 480 Query 577 AATGGCTATG 586 |||||||||| Sbjct 481 AATGGCTATG 490 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59915955385 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5