BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53470.2

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485723 jgi|Araly1|485723|fgenesh2_kg.5__1715__AT3G53470.1         688    0.0  


> Ahg485723 jgi|Araly1|485723|fgenesh2_kg.5__1715__AT3G53470.1
Length=508

 Score =  688 bits (372),  Expect = 0.0
 Identities = 457/495 (92%), Gaps = 18/495 (4%)
 Strand=Plus/Plus

Query  1    AAGAAG-AGAAGAAGAACAC-AACAGTCAGATACTTTTTCTTCTTATTTTGTCCGTACCG  58
            |||||| ||||||||||||| |||| |||||||| |||| ||||||||||||||||||||
Sbjct  20   AAGAAGAAGAAGAAGAACACAAACACTCAGATAC-TTTT-TTCTTATTTTGTCCGTACCG  77

Query  59   AAATCGGAAAATGGACATTACTGTTCGAATCTCCGGCTTAAAATCCTCCAATCTAATCCG  118
             |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct  78   TAATCGGAAAATGGACATTTCTGTTCGAATCTCCGGCTTAAAATCCTCCAATCTCATCCG  137

Query  119  GATAACCCCTAGATTCTCA------TCTTC--C-TCTAGATTCCGTTGCTCCAACAACGA  169
             |||| |||||||||||||      |||||  | |||||||||||||| ||||| |||||
Sbjct  138  AATAATCCCTAGATTCTCATCTTCTTCTTCTTCTTCTAGATTCCGTTGTTCCAAAAACGA  197

Query  170  ACCTCCTCGAAAGGGAAACGAGTCCAACGCAGGTGGTGGTGGTGATAAAGCGTCGACGGA  229
            |||||| ||||| | ||||||||||||  | |||||||||||||||||| ||||||||||
Sbjct  198  ACCTCCCCGAAACGCAAACGAGTCCAA--C-GGTGGTGGTGGTGATAAATCGTCGACGGA  254

Query  230  CTGGGACAAGGCGTGGAAGAATTTCAAGAAGCAGAGCAAGAAGTCATTGTTCTCGCAATT  289
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  255  TTGGGACAAGGCGTGGAAGAATTTCAAGAAGCAGAGCAAGAAGTCATTGTTCTCTCAATT  314

Query  290  CAACGTGGACAAGTACGTGACTTGGAATCCTCCC-AGATCGGAGTTTGATTTGTCGGAAG  348
            |||||| ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct  315  CAACGTCGACAAGTACGTGACTTGGAATCC-CCCGAGATCGGAGTTTGACTTGTCGGAAG  373

Query  349  AAGTCGATCCTATAAAAAGAACAGAGAGATCCAATCTCATGCTCTGGACAAGTCCAAGGT  408
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  374  AAGTCGATCCCATAAAAAGAACAGAGAGATCCAATCTCATGCTCTGGACAAGTCCGAGGT  433

Query  409  TCACACTTGTTGGAGCCATCGTCATTGTCTCATTCCTCCTTCTCTACACCATTCTTGCTC  468
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  434  TCACACTTGTCGGAGCCATCGTCATTGTCTCATTCCTCCTTCTCTACACCATTCTTGCTC  493

Query  469  CTGTCAAGTGATAAT  483
            ||||||||| |||||
Sbjct  494  CTGTCAAGTAATAAT  508



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21481596607


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5