BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53470.2 Length=587 Score E Sequences producing significant alignments: (Bits) Value Ahg485723 jgi|Araly1|485723|fgenesh2_kg.5__1715__AT3G53470.1 688 0.0 > Ahg485723 jgi|Araly1|485723|fgenesh2_kg.5__1715__AT3G53470.1 Length=508 Score = 688 bits (372), Expect = 0.0 Identities = 457/495 (92%), Gaps = 18/495 (4%) Strand=Plus/Plus Query 1 AAGAAG-AGAAGAAGAACAC-AACAGTCAGATACTTTTTCTTCTTATTTTGTCCGTACCG 58 |||||| ||||||||||||| |||| |||||||| |||| |||||||||||||||||||| Sbjct 20 AAGAAGAAGAAGAAGAACACAAACACTCAGATAC-TTTT-TTCTTATTTTGTCCGTACCG 77 Query 59 AAATCGGAAAATGGACATTACTGTTCGAATCTCCGGCTTAAAATCCTCCAATCTAATCCG 118 |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 78 TAATCGGAAAATGGACATTTCTGTTCGAATCTCCGGCTTAAAATCCTCCAATCTCATCCG 137 Query 119 GATAACCCCTAGATTCTCA------TCTTC--C-TCTAGATTCCGTTGCTCCAACAACGA 169 |||| ||||||||||||| ||||| | |||||||||||||| ||||| ||||| Sbjct 138 AATAATCCCTAGATTCTCATCTTCTTCTTCTTCTTCTAGATTCCGTTGTTCCAAAAACGA 197 Query 170 ACCTCCTCGAAAGGGAAACGAGTCCAACGCAGGTGGTGGTGGTGATAAAGCGTCGACGGA 229 |||||| ||||| | |||||||||||| | |||||||||||||||||| |||||||||| Sbjct 198 ACCTCCCCGAAACGCAAACGAGTCCAA--C-GGTGGTGGTGGTGATAAATCGTCGACGGA 254 Query 230 CTGGGACAAGGCGTGGAAGAATTTCAAGAAGCAGAGCAAGAAGTCATTGTTCTCGCAATT 289 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 255 TTGGGACAAGGCGTGGAAGAATTTCAAGAAGCAGAGCAAGAAGTCATTGTTCTCTCAATT 314 Query 290 CAACGTGGACAAGTACGTGACTTGGAATCCTCCC-AGATCGGAGTTTGATTTGTCGGAAG 348 |||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||||| Sbjct 315 CAACGTCGACAAGTACGTGACTTGGAATCC-CCCGAGATCGGAGTTTGACTTGTCGGAAG 373 Query 349 AAGTCGATCCTATAAAAAGAACAGAGAGATCCAATCTCATGCTCTGGACAAGTCCAAGGT 408 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 374 AAGTCGATCCCATAAAAAGAACAGAGAGATCCAATCTCATGCTCTGGACAAGTCCGAGGT 433 Query 409 TCACACTTGTTGGAGCCATCGTCATTGTCTCATTCCTCCTTCTCTACACCATTCTTGCTC 468 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 434 TCACACTTGTCGGAGCCATCGTCATTGTCTCATTCCTCCTTCTCTACACCATTCTTGCTC 493 Query 469 CTGTCAAGTGATAAT 483 ||||||||| ||||| Sbjct 494 CTGTCAAGTAATAAT 508 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21481596607 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5