BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53500.2
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323893 jgi|Araly1|323893|fgenesh1_pm.C_scaffold_5001437 1419 0.0
> Ahg323893 jgi|Araly1|323893|fgenesh1_pm.C_scaffold_5001437
Length=855
Score = 1419 bits (768), Expect = 0.0
Identities = 827/856 (97%), Gaps = 2/856 (0%)
Strand=Plus/Plus
Query 164 ATGCCTCGCTATGATGATCGCTATGGAAACACTCGCCTCTATGTTGGTCGCTTATCATCT 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGCCTCGCTATGATGATCGCTATGGAAACACTCGCCTCTATGTTGGTCGCTTGTCATCT 60
Query 224 AGAACTCGTACCAGAGACCTTGAGCGTCTCTTTAGCAGATACGGAAGAGTACGAGATGTG 283
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 AGAACTCGTACCAGAGACCTTGAACGTCTATTTAGCAGATACGGAAGAGTACGAGATGTG 120
Query 284 GATATGAAGCGTGATTATGCCTTTGTTGAATTTAGTGATCCTCGTGATGCTGATGACGCA 343
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GATATGAAGCGTGATTATGCCTTTGTTGAATTTAGTGATCCTCGGGATGCTGATGACGCA 180
Query 344 AGATATTACTTGGATGGACGGGATTTCGATGGAAGTCGCATCACTGTGGAGGCATCAAGA 403
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGATATTACCTGGATGGACGGGATTTCGATGGAAGTCGCATCACTGTGGAGGCATCAAGA 240
Query 404 GGGGCTCCTCGTGGTTCGCGGGACAATGGTAGCAGAGGCCCACCTCCTGGTTCTGGTCGC 463
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GGGGCGCCTCGTGGTTCTCGGGACAATGGTAGCAGAGGCCCTCCTCCTGGTTCTGGTCGC 300
Query 464 TGTTTTAATTGTGGTGTCGATGGCCACTGGGCCCGAGACTGCACAGCAGGAGACTGGAAG 523
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 301 TGTTTTAATTGTGGTGTTGATGGTCACTGGGCCCGAGACTGCACAGCAGGAGATTGGAAG 360
Query 524 AATAAATGTTACCGCTGTGGTGAAAGAGGACACATTGAGAGAAACTGCAAAAACAGTCCT 583
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 361 AATAAATGTTACCGCTGTGGAGAAAGAGGACACATCGAGAGAAACTGCAAGAACAGTCCT 420
Query 584 AGTCCAAAGAAGGCCAGGCAGGGTGGAAGCTATTCCAGGTCACCAGTCAAATCCCGCTCC 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGTCCAAAGAAGGCCAGGCAGGGTGGAAGCTATTCCAGGTCACCAGTCAAATCCCGCTCC 480
Query 644 CCTCGTCGCCGAAGGAGCCCAAGCCGTAGCCGTAGTTACAGTCGAGGTCGCAGCTACAGT 703
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 CCTCGTCGCCGAAGGAGCCCAAGCCGTAGCCGCAGTTACAGTCGAGGTCGCAGCTACAGT 540
Query 704 CGATCGCGATCCCCAGTGAGAAGAGAGAAAAGCGTGGAGGACAGATCACGCAGTCCTAAG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 CGATCGCGATCCCCAGTGAGAAGAGAGAAAAGCGTGGAGGACAGATCACGCAGCCCTAAG 600
Query 764 GCAATGGAGCGATCTGTATCTCCCAAAGGTAGGGACCAAAGCCTGAGTCCAGACCGAAAA 823
||||||||||||||| | ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 601 GCAATGGAGCGATCTTTGTCTCCTAAAGGCAGGGACCAAAGCCTGAGCCCAGACCGAAAA 660
Query 824 GTGATAGATGCAAGCCCAAAGCGTGGATCAGACTATGATGGTAGCCCAAAAGAGAATGGT 883
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 GTGATAGATGCGAGCCCAAAGCGTGGATCAGAGTATGATGGTAGCCCAAAAGAGAATGGT 720
Query 884 AATGGCAGGAACTCTGCGAGTCCCATTGTTGGAGGTGGTGAAAGTCCTGTTGGACTTAAT 943
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 AATGGCAGGAACTCTGTGAGTCCCATTGTTGGAGGTGATGAAAGTCCTGTTGGACTTAAT 780
Query 944 GGTCAAGACAGGAG-CCCGATTGATGATGAGGCTGAGCTTAGCCGTCCTTCCCCTAAAGG 1002
|||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||
Sbjct 781 GGTCAAGACAGGAGTCCC-ATTGATGATGAGGCTGAGCTTAACCGCCCTTCCCCTAAAGG 839
Query 1003 CAGTGAGTCACCTTGA 1018
||||||||||||||||
Sbjct 840 CAGTGAGTCACCTTGA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5