BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53620.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485748 jgi|Araly1|485748|fgenesh2_kg.5__1740__AT3G53620.1 1489 0.0
> Ahg485748 jgi|Araly1|485748|fgenesh2_kg.5__1740__AT3G53620.1
Length=1024
Score = 1489 bits (806), Expect = 0.0
Identities = 990/1070 (93%), Gaps = 48/1070 (4%)
Strand=Plus/Plus
Query 4 TTCCAAAATTAAAGAGAATTTAATTTATTGTTTTCCTTCCAGAAA-AAT-ATTAATATTC 61
||||||||||||||||| |||||||||||||||||| |||| ||| | | ||||||||||
Sbjct 1 TTCCAAAATTAAAGAGATTTTAATTTATTGTTTTCC-TCCA-AAATATTAATTAATATTC 58
Query 62 TTTCTAAACTAAAAAATGGAGTCTTCAAATAGCACAGAAGCAGAGACATAGAGCGGGAAC 121
|||||||| | | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 59 TTTCTAAAAT-ATAAATGGAGTCTTCAAATAGCACAGAAGCAGAGACAGAGAGCGGGAAC 117
Query 122 GCGTTTAGTCACAGctttcttctcctttagcttttctctctacacttgcttctctctctc 181
|||| |||| |||||||||||||||||||||||| |||||| || | || || ||||
Sbjct 118 GCGTATAGTTACAGCTTTCTTCTCCTTTAGCTTTCCTCTCT--AC-T-ATT-GCT-TCTC 171
Query 182 tctcCTTTGGGTTATCCTTCTTGAGATCTGTGCTTGCGTTTCTTCTTCATTCGACGACAC 241
||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TCT-C---------TCCTTCTTGAGATCTGTGCTTGCGTTTCTTCTTCATTCGACGACAT 221
Query 242 TTTATCTCGGGAGATTTCAGATTTGTCGATTTGTTCAGCAATGGCGCCACCGATTGAGGT 301
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 222 TTTAGCTCGGGAGATTTCAGATTTGTCGATTTGCTCAGCAATGGCGCCACCGATTGAGGT 281
Query 302 TTCTACCAAAAGCTACGTTGAGAAACATGTTTCACTTCCTACTCTTAATGAGAGGATACT 361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TTCCACCAAAAGCTACGTTGAGAAACATGTTTCACTTCCTACTCTTAATGAGAGGATACT 341
Query 362 TTCGTCCATGAGTCACAGATCAGTAGCTGCACACCCATGGCATGATCTCGAGATAGGACC 421
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 342 TTCGTCCATGAGCCACAGATCAGTTGCTGCACACCCATGGCATGATCTCGAGATAGGACC 401
Query 422 TGAAGCCCCAATTATCTTCAATTGTGTGGTTGAGATAGGAAAAGGGAGCAAGGTGAAATA 481
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 402 TGAGGCCCCAATTATCTTCAATTGTGTGGTTGAGATAGGAAAAGGGAGCAAGGTGAAGTA 461
Query 482 TGAACTCGACAAAACTACGGGTCTCATTAAGGTCGACCGTATTCTTTACTCATCTGTCGT 541
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 462 TGAACTTGACAAAACTACCGGTCTCATTAAGGTCGATCGTATTCTTTACTCATCTGTCGT 521
Query 542 ATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 ATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGA 581
Query 602 TGTTCTTGTCATTATGCAGGAACCGGTGATCCCAGGATGCTTTCTTCGGGCCAAAGCTAT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TGTTCTTGTCATTATGCAGGAACCGGTGATCCCAGGATGCTTTCTTCGGGCCAAAGCTAT 641
Query 662 TGGTCTGATGCCAATGATTGATCAGGGTGAGAAAGACGACAAGATCATTGCTGTCTGCGC 721
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 642 TGGTCTGATGCCAATGATTGACCAGGGTGAGAAAGACGACAAGATTATTGCTGTCTGCGC 701
Query 722 TGACGATCCAGAGTATCGCCATTACAACGACATCAGTGAGCTTCCGCCTCATCGTATGGC 781
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TGATGATCCAGAGTATCGCCATTACAACGACATCAGTGAGCTTCCGCCTCATCGTATGGC 761
Query 782 TGAGATCCGCCGTTTCTTTGAAGACTATAAGAAAAACGAGAACAAGGAAGTAGCCGTTAA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TGAGATCCGCCGTTTCTTTGAAGACTATAAGAAAAACGAGAACAAGGAAGTAGCCGTTAA 821
Query 842 CGACTTCCTTCCGGCAACTGCAGCCTACGACGCAGTTCAGCATTCCATGGATCTCTATGC 901
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 822 CGACTTCCTTCCTGCAACTGCAGCGTACGACGCAGTTCAGCATTCCATGGATCTCTATGC 881
Query 902 AGACTACGTCGTGGAGAACCTAAGACGTTGAATCACCACCTCAAGCAATGGAATGAAAGC 961
|||||||||||||||||||||||||||||||| | | || | |
Sbjct 882 AGACTACGTCGTGGAGAACCTAAGACGTTGAA--A--A------GC--T----------C 919
Query 962 TCACAACTGCATTATTCACAAATATAAATATACATATAAATGTCAGGCTTCTCAAAGGAT 1021
||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 920 --ACAACTGCATTTTTCATAAATATAAGTATACATATAAATGTCAGGCTTCCCAAAGGAT 977
Query 1022 ATATTTGTTGTGTATGTCCTCTGATGAATCCGGTAGATGATGCCGATAAT 1071
|| ||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 978 ATCTTTGT-GT--ATGTCCTCTGATGAATCCGTTAGATGATGCCGATAAT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5