BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53830.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485777 jgi|Araly1|485777|fgenesh2_kg.5__1769__AT3G53830.1 1426 0.0
> Ahg485777 jgi|Araly1|485777|fgenesh2_kg.5__1769__AT3G53830.1
Length=1683
Score = 1426 bits (772), Expect = 0.0
Identities = 865/909 (95%), Gaps = 10/909 (1%)
Strand=Plus/Plus
Query 688 TCAGATTTAGGACAGATTTGGGGTTGGGGATATGGAGGCGAAGGTCAACTAGGATTGGGT 747
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 733 TCAGATATAGGACAGATTTGGGGTTGGGGATATGGAGGTGAAGGTCAACTAGGATTGGGT 792
Query 748 TCCCGGATTAAAATGGTGTCATCTCCTCATCTAATACCTTGCCTTGAATCAATTGGATCT 807
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 793 TCCCGGATTAAAATGGTGTCGTCTCCTCATCTAATACCTTGCCTTGAATCAACTGGATCT 852
Query 808 GGAAAAGAAAGATCTTTCATATTACATCAAGGAGGAACAACAACCACGTCTGCTCAAGCT 867
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 853 GGAAAAGAAAGATCTTTCATATTACATCAAGGAGGAACAACAACCACGTCTGCTCAAGTT 912
Query 868 TCTAGAGAACCTGGTCAGTACATCAAGGCCATTTCATGTGGAGGTCGTCATAGCGCAGCA 927
|||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 913 TCTAGAGAACCTGGTCGGTACATCAAGGCCATTTCTTGTGGCGGTCGTCATAGCGCAGCA 972
Query 928 ATTACAGATGCTGGCGGGTTAATAACTTTTGGCTGGGGACTCTATGGACAGTGTGGCCAC 987
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 ATTACAGATGCTGGAGGGTTAATAACTTTTGGCTGGGGACTCTATGGACAGTGTGGCCAC 1032
Query 988 GGAAACACAAATGACCAGTTAAGGCCCATGGCTGTGTCAGAAGTGAAGAGTGTTCGGATG 1047
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1033 GGAAACACAAATTACCAGTTAAGGCCCATGGCTGTGTCATCAGTGAAGAGTGTTCGGATG 1092
Query 1048 GAAAGCGTAGCAGCTGGATTGTGGCACACTATTTGCATCTCTAGTGATGGTAAAGTGTAT 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GAAAGCGTAGCAGCTGGATTGTGGCACACTATTTGCATCTCTAGTGATGGTAAAGTGTAT 1152
Query 1108 GCCTTCGGTGGAAACCAATTTGGGCAACTGGGAACTGGTACTGATCATGCTGAGATATTA 1167
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1153 GCCTTTGGTGGAAACCAATTTGGGCAACTGGGAACTGGCACTGATCATGCTGAGATATTA 1212
Query 1168 CCGAGGTTGCTGGATGGCCAGAATTTGGAGGGCAAACATGCAAAAGCAGTTAGTTGCGGC 1227
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1213 CCGAGGTTGCTGGATGGCCAGAATTTGGAGGGCAAACATGCGAAAGCAGTTAGTTGTGGC 1272
Query 1228 GCGCGACATAGTGCGGTTTTGGCAGAAGATGGTCAGTTGCTATGCTGGGGATGGAACAAA 1287
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GCGCGGCATAGTGCGGTTTTGGCAGAAGATGGTCAGTTGCTATGCTGGGGATGGAACAAA 1332
Query 1288 TATGGACAGCTGGGTCTAGGGGACACGAATGACCGGAACATTCCTACACAAGTCCAGCTG 1347
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1333 TATGGACAGCTGGGTCTAGGGGACACAAATGACCGGAACATTCCTACACAAGTCCAGCTT 1392
Query 1348 GATGGCTGCAGACTGAGAAAAGTGGCGTGTGGATGGTGGCATACATTGCTACTAGGAGAT 1407
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1393 GATGGCTGCAGACTGAGAAAAGTGGCGTGTGGATGGTGGCATACATTACTACTAGCAGAT 1452
Query 1408 TCACCCACTTGAGTTTTCCCAACCAATCACCAAATCCTCAGATACACATTTCCGGGTTTT 1467
| |||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||
Sbjct 1453 TTACCCACTTGAGTTTTCTCAACCAATCACCAAATCCTC-GATAGACATTTCTGGGTTTT 1511
Query 1468 -GTCTGTAGGTTTGACGATGTACATACA----GACAGGCTTTTTGCTGTGTATGTATTTC 1522
| || ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1512 TGCCTCTAGGTTTGACGCTGTACATACATACAGACAGGCTTTTTGCTGTGTATGTATTTT 1571
Query 1523 CTTCTTTAA-CATTAATCCGTCTTCATGTTTTTTACTTAGGGGGAGAGCTTTGACTTTGT 1581
|||||| || | || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1572 CTTCTTCAATCTTTCC-CCGTCTTCATGTTTTTTACTTAGGGAGAGAGCTTTGACTTTGT 1630
Query 1582 A-TTGTGTA 1589
| || ||||
Sbjct 1631 AGTT-TGTA 1638
Score = 1094 bits (592), Expect = 0.0
Identities = 659/692 (95%), Gaps = 2/692 (0%)
Strand=Plus/Plus
Query 1 ATGAATGGGAATATTGTAGGAAAGGTTCCGATTGGGGAATGTAAAGCGACTGTAGTTTAC 60
|||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGGAAATATCGGAGGAAAGGTTCCGATTGGGGAATGTAAAGCGACTGTAGTTTAC 60
Query 61 ATGTCCGGTTACTTACCAGGAGCTGCGTCGGAGAAATCCCCGATTCTCTCCCCTGTTCCC 120
||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 61 ATGTCCGGTTACTTACCAGGAGCTGCGCCGGAGAAATCCCCAATTCTCTCTCCTGTTCCC 120
Query 121 GTGCGTTTATCGGCGGCTGTTCACGGTGGAGATTCGTGGAAAGATGTATGTGGTGGTGGT 180
||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 121 GTGCGTTTACCGGCGGCTGTTCACGGAGGAGATTCATGGAAAGATGTATGTGGCGGCGGT 180
Query 181 TGTGGATTCGCTATGGCTATTTCAGAGAAAGGA-AAGCTTATAACTTGGGGTTCTACTGA 239
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 181 TGTGGATTCGCTATGGCTATTTCAGA-AAAGGGGAAGCTTATAACTTGGGGTTCTACTGA 239
Query 240 TGATGAAGGACAGAGCTATGTGGCTTCTGGGAAGCATGGGGAAACTCCAGAGCCGTTTCC 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 240 TGATGAAGGACAGAGCTATGTGGCTTCTGGAAAGCATGGGGAAACTCCAGAGCTGTTCCC 299
Query 300 TCTTCCTACGGAGGCTCCAGTCGTTCAGGCTTCTTCAGGATGGGCACATTGTGCGGTTGT 359
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TCTTCCCACTGAGGCTCCAGTCGTTCAGGCTTCTTCAGGATGGGCACATTGTGCCGTTGT 359
Query 360 AACAGAGACTGGTGAAGCATTTACTTGGGGTTGGAAGGAGTGCATTCCATCAAAGGATCC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 AACAGAGACTGGTGAAGCATTTACTTGGGGTTGGAAGGAGTGCATTCCATCAAAGGATAC 419
Query 420 TGTTGGAAAGCAGCAGAGTGGCTCAAGTGAGCAAGGTGATATCGCATCACAAGGTTCAAA 479
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 420 TGTTGGAAAGCAGCAGAGTGGCTCTAGTGAGCAAGGTGAGATCGCATCACAAGGTTCAAA 479
Query 480 TGCGGCTAGTGGTACGACACTACAGAATGAGAACCAAAAGGTAGGGGAGGAATCAGTGAA 539
| | |||||||||| ||||||||||||||||| || |||||||||||||||||| |||||
Sbjct 480 TACAGCTAGTGGTATGACACTACAGAATGAGACCCGAAAGGTAGGGGAGGAATCGGTGAA 539
Query 540 GCGGAGACGGGTTTCAACTGCCAAAGATGAAACTGAAGGCCATACATCTGGAGGCGACTT 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GCGGAGACGGGTTTCAACTGCCAAAGATGAAACCGAAGGCCATACATCTGGAGGCGACTT 599
Query 600 CTTTGCTACAACACCTTCACTTGTGAGTGTTGGCCTTGGAGTGAGGATCACCAGTGTTGC 659
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 CTTTGCTACAACACCTTCGCTTGTGAGTGTTGGCCTTGGAGTGAAGATCACCAGTGTTGC 659
Query 660 TACTGGTGGTCGGCATACGCTGGCATTGTCAG 691
|||||||||||||||||| |||||||||||||
Sbjct 660 TACTGGTGGTCGGCATACTCTGGCATTGTCAG 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5