BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G53920.1
Length=2017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898325 jgi|Araly1|898325|Al_scaffold_0005_2291 2529 0.0
> Ahg898325 jgi|Araly1|898325|Al_scaffold_0005_2291
Length=1707
Score = 2529 bits (1369), Expect = 0.0
Identities = 1604/1718 (93%), Gaps = 13/1718 (1%)
Strand=Plus/Plus
Query 130 ATGGCTTCCTTCAATTCGTTCCCCATTCCCAAACAGATTGTTGGTTCTTCTTCTTCGTCG 189
||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCTTTCAATTCATTCCCAATTCCCAAACAGATTGTTGGTTCTTCTTCTTCGTCG 60
Query 190 TCCTCCTCTACTTCTCGGCCACGTATTTTAGTGCGATCGAGTTTAACATCGTCTATGACC 249
||||| |||||||||||||||||||| || |||||||||||| |||||||||| |||| |
Sbjct 61 TCCTCGTCTACTTCTCGGCCACGTATCTTGGTGCGATCGAGTATAACATCGTCCATGAGC 120
Query 250 TCTACCAATAGTATGCTGGTCTTTGTACATCCTCATCCTTTGATTAAACATTGGCTCTCG 309
||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 121 TCTACCAATAGTATGCTGGTCTTCGTACCTCCACATCCTTTGATTAAACATTGGCTCTCG 180
Query 310 TTATTGAGATCTGACCAAACTTCTTTCCCCATTTTCGTTAGAATTCCAATGACTT-CTGT 368
|||||||||| |||||||||||||||||| ||||||||||||||||| ||| || || |
Sbjct 181 TTATTGAGATGTGACCAAACTTCTTTCCCTATTTTCGTTAGAATTCCGGTGAGTTCCT-T 239
Query 369 GGTTGCAACGAGGTGGTCGTTTCTATCCTCAGTCAAAGAGGAAAGCAGAATTTATCAGAA 428
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TGTTGCAACGAGGTGGTCGTTTCTATCCTCAGTCAAAGAGGAAAGCAGAATATATCAGAA 299
Query 429 CGATTCTCTAAAAGCATGTGGCTGCGCATCTGT-ATCTCCTTACACTGCACAAAATAATG 487
||| |||| |||||| ||||||||| | | |||| ||||||||| ||||| |
Sbjct 300 AGATCCTCTTAAAGCA------TGCGCATCT-TCAGCTCCCTACACTGCAGAAAAT-GTA 351
Query 488 TTTATGTTGAGCTCAAAGACCCAAAGGAAAATATTGGCGTGGGTTCTGCAGAAAGATCAT 547
||| | | ||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 352 TTT-T-TAGAGCTCAAAGACCCAAAGGAAAATATTGGTGTGGGTTCTGCAGAAAAATCAT 409
Query 548 ATTCATCTCGTAGCATGTTGCAATACAATTTACTGGCAAAGAACCTTTTGGCACTAGAGG 607
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 410 ACTCATCTCGTAGCATGTTGCAATACAATTTACTAGCAAAGAACCTTTTGGCACTAGAGG 469
Query 608 AAACGTTTGTTGCCTTGGATTCTGTAAGAATGGAAAGAGATATTATGTTGCAAATGGGGA 667
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 470 AAACTTTTGTTGCCTTGGATTCTTTAAGAATGGAAAGAGATATTATGTTGCAAATGGGGA 529
Query 668 AGTTGGGGGCTGCTGAGTTATTTAAAACCTGTCTATCTAGGTATCGTGGTTCCTCAATCA 727
|| ||||||||||||| |||||||||||||| |||||||| | ||||||||| ||| |
Sbjct 530 AGCTGGGGGCTGCTGACTTATTTAAAACCTGCCTATCTAGATCTCGTGGTTCTTCAGTTG 589
Query 728 CGTCGTGCTTATCTGACACAACTGAGTTGGTGGATACTACGCCGAATCAACAAGTCTTTG 787
|||| ||||||||||||||||| |||||||||| |||||| ||||| || ||||||||||
Sbjct 590 CGTCATGCTTATCTGACACAACCGAGTTGGTGGGTACTACACCGAAACAGCAAGTCTTTG 649
Query 788 TATCCTCGAGGAGAAAAGTAAAAAAGAAAGCAAGGAGGTCGAGTGTGACAGCTGAGAATG 847
|||||||||| |||||| | ||| ||||| |||| |||||||||||||||||||||||||
Sbjct 650 TATCCTCGAGAAGAAAATTGAAAGAGAAATCAAGAAGGTCGAGTGTGACAGCTGAGAATG 709
Query 848 GTGATCAGAGTTCTCTGCCAATCGGTTTAAGAACTACATGGAACAATATTGATGTCCCTA 907
|||||||| ||||| ||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 710 GTGATCAGGGTTCTTTGCCAATCGGTTTGAGAACCACATGGAATAATATTGATGTCCCTA 769
Query 908 GAGTGAGAAGACCACCAAAATATAGAAAGAAAAGAGAGAGGATCTCTAGAAACGAGACTG 967
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 770 GAGGGAGAAGACCACCAAAATATAGAAAGAAAAGAGAGAGGATCTCTAGAAACGAGGCTG 829
Query 968 AGATGTCAACAGGAGTCAAGATAGTGGCGGACATGGAGAGAATCAGAACACAACTGGAGG 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AGATGTCAACAGGAGTCAAGATAGTGGCGGACATGGAGAGAATCAGAACACAACTGGAGG 889
Query 1028 AAGAAAGTGGTAAGGTAGCGAGTTTGAGTTGTTGGGCTGCAGCAGCTGGGATGAACGAGA 1087
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 890 AAGAAAGTGGTAAGGTAGCGAGTTTGAGTTGTTGGGCTGAAGCAGCTGGGATGAACGAAA 949
Query 1088 AACTCCTGATGCGCAATCTACATTACGGTTGGTACTGTAGAGATGAACTGGTGAAAAGCA 1147
||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 950 AACTCCTGATGCGCAATCTACATTATGGTTGGTACTGTAGAGATGAACTGTTAAAAAGCA 1009
Query 1148 CCCGGTCTTTGGTTCTCTTCCTCGCAAGAAATTACCGTGGACTGGGAATCGCCCACGAAG 1207
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1010 CCCGGTCTTTGGTTCTCTTCCTTGCAAGAAATTACCGTGGACTGGGAATCGCCCACGAAG 1069
Query 1208 ATTTAATTCAGGCAGGGTATGTGGGGGTGTTACAAGGAGCAGAGAGGTTTGATCACACAA 1267
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1070 ATTTAATTCAGGCAGGGTATGTGGGGGTGTTACAAGGAGCAGAGAGGTTTGATCACACTA 1129
Query 1268 GGGGTTACAAGTTTTCAACATATGTGCAGTATTGGATAAGAAAATCAATGTCTACGATGG 1327
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1130 GGGGTTACAAGTTTTCAACATATGTGCAGTATTGGATAAGAAAATCAATGTCCATGATGG 1189
Query 1328 TGTCACGGCATGCAAGAGGCGTCCATATTCCTTCATCAATAATCCGAACTATCAATCATA 1387
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1190 TGTCACGGCATGCAAGAGGCGTCCATATTCCTTCATCAATAATTCGAACTATCAATCAGA 1249
Query 1388 TACAAAAGGCTCGTAAGACCCTGAAAACGAGCCATGGTATAAAATATGCGGCTGATGAGG 1447
|||||||||||||||||||| ||||||||||||| || ||||||||| |||| |||||||
Sbjct 1250 TACAAAAGGCTCGTAAGACCTTGAAAACGAGCCACGGGATAAAATATCCGGCGGATGAGG 1309
Query 1448 AGATTGCAAAACTAACAGGCCACTCGGTGAAGAAGATTCGAGCAGCTAACCAATGCCTAA 1507
||||| | ||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1310 AGATTTCGAAACTAACAAGCCTCTCTGTGAAAAAGATTCGAGCAGCTAACCAATGCCTAA 1369
Query 1508 AAGTGGTCGGTTCAATTGACAAGAAAGTTGGGGATTGCTTTACTACAAAATTCCTGGAAT 1567
|||||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||
Sbjct 1370 AAGTGGTCGGTTCAATCGAAAAGAAAGTCGGGGATTGCTTTTCTACAAAATTCCTGGAAT 1429
Query 1568 TTACACCAGACACAACGATGGAGAGTCCTGAGGAGGCCGTGATGAGGCAGAGCGCGAGGA 1627
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TTACACCGGACACGACGATGGAGAGTCCTGAGGAGGCCGTGATGAGGCAGAGCGCGAGGA 1489
Query 1628 GAGACATACATGATCTTCTAGAAGGGTTAGAGCCAAGAGAGAAGCAAGTGATGGTCCTAC 1687
|||||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1490 GAGACATACATGATATTTTAGAAGGGCTAGAGCCAAGAGAGAAGCAAGTGATGGTTCTAC 1549
Query 1688 GTTATGGTCTTCAAGACTACAGGCCCAAGTCCCTGGAAGAGATTGGGAAGCTTCTTAAAG 1747
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1550 GTTATGGTCTTCAAAACTACAGGCCCAAGTCCCTGGAAGAGATTGGGAAGCTTCTTAGGG 1609
Query 1748 TTAGCAAAGAATGGATTCGGAAGATCGAACGGAGAGCAATGGCTAAACTCAGAGACCAAC 1807
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1610 TTAGCAAAGAATGGATTCGGAAGATCGAACGGAGAGCGATGGCGAAACTCAGGGACCAAC 1669
Query 1808 CCAACGCCGAAGACCTCAGATATTATTTGAATCAGTAA 1845
||||||||||||||||||||||||||||||||||||||
Sbjct 1670 CCAACGCCGAAGACCTCAGATATTATTTGAATCAGTAA 1707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75837677795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5