BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G53990.1

Length=919
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938310 jgi|Araly1|938310|scaffold_502501.1                        872    0.0  


> Ahg938310 jgi|Araly1|938310|scaffold_502501.1
Length=556

 Score =  872 bits (472),  Expect = 0.0
 Identities = 508/525 (97%), Gaps = 3/525 (1%)
 Strand=Plus/Plus

Query  72   AACCATCTCAAAGTTTCTTGAGAAGaa-aaaaaGGGTCAAGAAAGATGCCTAAAGACAGG  130
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    AACCATCTCAAAGTTTCTTGAGAAGAAGAAAAAGGGTCAAGAAAGATGCCTAAAGACAGG  60

Query  131  AATATCGGAATCGCCATGGATTTCTCAGAGAGCAGCAAGAACGCTCTGAAATGGGCGATC  190
            || ||||||||||||||||| ||||| || ||||||||||||||| || ||||||| |||
Sbjct  61   AAGATCGGAATCGCCATGGACTTCTCTGATAGCAGCAAGAACGCTTTGCAATGGGCCATC  120

Query  191  GAGAACTTAGCAGACAAAGGAGACACGA-TTTACATCATCCACACTCTACCACTCTCTGG  249
            ||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||| 
Sbjct  121  GAGAACTTAGCGGATAAAGGAGACAC-ACTTTACATCATCCACACTCTACCACTCTCTGA  179

Query  250  CGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCCTCTCATACCGTTGGCAGA  309
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  180  CGATGAATCTCGTAACTCTCTCTGGTTCAAATCCGGTTCTCCTCTCATACCGTTGGCAGA  239

Query  310  GTTTAGGGAACCGGAGATTATGGAGAAATACGGTGTCAAAACCGACATCGCATGTCTTGA  369
            |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct  240  GTTTAGGGAACCGGAGATTATGGACAAATACGGTGTCAAAATCGACATCGCATGTCTTGA  299

Query  370  TATGCTCGACACTGGTTCGAGGCAGAAAGAGGTGCATGTAGTGACCAAGTTATACTGGGG  429
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TATGCTCGACACTGGCTCGAGGCAGAAAGAGGTGCATGTAGTGACCAAGTTATACTGGGG  359

Query  430  AGATGCAAGAGAGAAGCTTGTTGATGCTGTTAAAGATCTTAAACTCGATTCTATTGTCAT  489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  AGATGCAAGAGAGAAGCTTGTTGATGCTGTTAAAGATCTTAAACTCGATTCTATTGTCAT  419

Query  490  GGGAAGCAGAGGACTCAGTGCTCTTCAAAGGATAATAATGGGAAGCGTGAGCAGCTTTGT  549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  GGGAAGCAGAGGACTCAGTGCTCTTCAAAGGATAATAATGGGAAGCGTGAGCAGCTTTGT  479

Query  550  GATCCAACACGCGCCTTGCCCTGTCACCGTTGTCAAGGATAACGA  594
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480  GATCCAACACGCGCCTTGCCCTGTCACCGTTGTCAAGGATAACGA  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34081887798


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5