BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G53990.1 Length=919 Score E Sequences producing significant alignments: (Bits) Value Ahg938310 jgi|Araly1|938310|scaffold_502501.1 872 0.0 > Ahg938310 jgi|Araly1|938310|scaffold_502501.1 Length=556 Score = 872 bits (472), Expect = 0.0 Identities = 508/525 (97%), Gaps = 3/525 (1%) Strand=Plus/Plus Query 72 AACCATCTCAAAGTTTCTTGAGAAGaa-aaaaaGGGTCAAGAAAGATGCCTAAAGACAGG 130 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 AACCATCTCAAAGTTTCTTGAGAAGAAGAAAAAGGGTCAAGAAAGATGCCTAAAGACAGG 60 Query 131 AATATCGGAATCGCCATGGATTTCTCAGAGAGCAGCAAGAACGCTCTGAAATGGGCGATC 190 || ||||||||||||||||| ||||| || ||||||||||||||| || ||||||| ||| Sbjct 61 AAGATCGGAATCGCCATGGACTTCTCTGATAGCAGCAAGAACGCTTTGCAATGGGCCATC 120 Query 191 GAGAACTTAGCAGACAAAGGAGACACGA-TTTACATCATCCACACTCTACCACTCTCTGG 249 ||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||| Sbjct 121 GAGAACTTAGCGGATAAAGGAGACAC-ACTTTACATCATCCACACTCTACCACTCTCTGA 179 Query 250 CGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCCTCTCATACCGTTGGCAGA 309 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CGATGAATCTCGTAACTCTCTCTGGTTCAAATCCGGTTCTCCTCTCATACCGTTGGCAGA 239 Query 310 GTTTAGGGAACCGGAGATTATGGAGAAATACGGTGTCAAAACCGACATCGCATGTCTTGA 369 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 240 GTTTAGGGAACCGGAGATTATGGACAAATACGGTGTCAAAATCGACATCGCATGTCTTGA 299 Query 370 TATGCTCGACACTGGTTCGAGGCAGAAAGAGGTGCATGTAGTGACCAAGTTATACTGGGG 429 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TATGCTCGACACTGGCTCGAGGCAGAAAGAGGTGCATGTAGTGACCAAGTTATACTGGGG 359 Query 430 AGATGCAAGAGAGAAGCTTGTTGATGCTGTTAAAGATCTTAAACTCGATTCTATTGTCAT 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AGATGCAAGAGAGAAGCTTGTTGATGCTGTTAAAGATCTTAAACTCGATTCTATTGTCAT 419 Query 490 GGGAAGCAGAGGACTCAGTGCTCTTCAAAGGATAATAATGGGAAGCGTGAGCAGCTTTGT 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GGGAAGCAGAGGACTCAGTGCTCTTCAAAGGATAATAATGGGAAGCGTGAGCAGCTTTGT 479 Query 550 GATCCAACACGCGCCTTGCCCTGTCACCGTTGTCAAGGATAACGA 594 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GATCCAACACGCGCCTTGCCCTGTCACCGTTGTCAAGGATAACGA 524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34081887798 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5