BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54050.1
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485801 jgi|Araly1|485801|fgenesh2_kg.5__1793__AT3G54050.1 2176 0.0
> Ahg485801 jgi|Araly1|485801|fgenesh2_kg.5__1793__AT3G54050.1
Length=1487
Score = 2176 bits (1178), Expect = 0.0
Identities = 1385/1481 (94%), Gaps = 29/1481 (2%)
Strand=Plus/Plus
Query 1 CCAAAACCAAACCTTCCAAAGtttttttCA-AAACAACACAGAAAAAATGGCAGCAACCG 59
||||||||||||||| |||||||||||||| || | | ||| ||||||||||||||||||
Sbjct 1 CCAAAACCAAACCTTGCAAAGTTTTTTTCAGAAGC-AGACACAAAAAATGGCAGCAACCG 59
Query 60 CCGCAACAACGACGTCGTCTCACCTTCTTCTCTCAAGCTCACGTCACGTGGCATCATCAT 119
|||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
Sbjct 60 CCGCAACAACGACGTCGTCTCATCTTCTTCTCTCAAGCTCACGTCACTTGGCGGCATCGT 119
Query 120 CCCAGCCTTCAATCC-TTTCACCGAGATCTCTCTTCTCCAACAACGGGAAACGAGCACCA 178
| ||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||| |
Sbjct 120 CTCAGCCTTCAATCCTTTTC-CCGAGATCTCTGTTCTCCAATAACGGGAAACGAGCAACT 178
Query 179 ACTGGAGTGAGGAACCATCA-GTAT-GCGAGTGGAGTGAGGTGTATGGCCGTAGCGGCGG 236
| |||| || |||||||| || | | | ||||||||||||||||||| || |||||||
Sbjct 179 AGTGGA---AGAAACCATCATGT-TGGTG-GTGGAGTGAGGTGTATGGCGGTGGCGGCGG 233
Query 237 ATGCTGCT---------GAGACGAAAACGGCGGCGAGGAAGAAGAGTGGATACGAACTTC 287
|||||||| ||||||||| | |||| ||||||||||||||||||||||| |
Sbjct 234 ATGCTGCTGCGGCGGCAGAGACGAAACCAGCGGTAAGGAAGAAGAGTGGATACGAACTCC 293
Query 288 AAACGTTGACGGGCTGGTTGCTGAGACAAGAGATGAAAGGAGAGATAGATGCAGAGCTGA 347
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 294 AAACGTTGACGAGCTGGTTGTTGAGACAAGAGATGAAAGGAGAGATAGATGCAGAGCTGA 353
Query 348 CGATAGTGATGTCGAGTATATCAT-TGGCTTGTAAGCAGATCGCTTCACTTGTTCAACGT 406
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 354 CGATAGTGATGTCGAGTATATC-TATGGCTTGTAAACAGATCGCTTCACTTGTTCAACGT 412
Query 407 GCCGGAATCTCTAACCTGACCGGAGTTCAAGGCGCCGTTAATATTCAGGGAGAGGATCAG 466
|||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 413 GCCGGAATATCTAATCTCACCGGAGTTCAAGGCGCCGTTAATATCCAGGGAGAGGATCAG 472
Query 467 AAGAAGCTTGACGTCATCTCTAATGAGGTGTTTTCCAACTGTTTGAGATCAAGTGGAAGA 526
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 473 AAGAAGCTTGACGTCATCTCTAATGAGGTGTTTTCCAACTGCTTGAGATCAAGTGGAAGA 532
Query 527 ACGGGAATCATAGCCTCGGAGGAAGAGGACGTGCCAGTTGCGGTGGAGGAGAGTTACTCC 586
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 533 ACGGGAATCATTGCCTCGGAGGAAGAGGACGTGCCAGTAGCGGTGGAGGAGAGTTACTCC 592
Query 587 GGCAACTACGTCGTCGTGTTTGACCCTCTTGATGGTTCCTCCAACATTGACGCTGCCGTC 646
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 593 GGCAACTACGTCGTCGTGTTTGACCCTCTTGACGGTTCCTCCAACATTGACGCTGCTGTC 652
Query 647 TCTACTGGTTCTATCTTCGGTATCTATAGCCCCAATGACGAATGCATTGTCGACGACTCC 706
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 653 TCTACCGGTTCTATCTTCGGTATCTATAGCCCCAATGACGAATGTATTGTCGACGACTCC 712
Query 707 GACGATATCTCAGCTCTTGGGTCAGAAGAACAAAGGTGTATAGTAAACGTGTGCCAGCCA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GACGATATCTCAGCTCTTGGGTCAGAAGAACAAAGGTGTATAGTAAACGTGTGCCAGCCA 772
Query 767 GGGAACAACTTGTTAGCAGCCGGCTACTGTATGTACTCGAGCTCGGTCATCTTCGTTCTT 826
||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 773 GGGAATAACTTGCTAGCAGCCGGCTACTGTATGTACTCGAGCTCAGTTATCTTCGTTCTT 832
Query 827 ACTCTAGGCAAAGGCGTTTTCTCCTTCACGCTCGATCCAATGTACGGTGAGTTTGTCCTC 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ACTCTAGGCAAAGGCGTTTTCTCCTTCACGCTCGATCCAATGTACGGTGAGTTTGTCCTC 892
Query 887 ACGCAAGAAAACATTGAGATCCCCAAAGCCGGGAGAATCTACTCTTTCAACGAAGGGAAT 946
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 893 ACGCAAGAAAACATTGAGATCCCCAAAGCCGGGAAAATCTACTCTTTCAACGAAGGAAAT 952
Query 947 TACCAGATGTGGGACGATAAACTAAAGAAGTACATTGATGATCTTAAGGACCCTGGTCCA 1006
|||||||||||||||| || || ||||||||||||||||| || |||||||||||||||
Sbjct 953 TACCAGATGTGGGACGGGAAGCTGAAGAAGTACATTGATGACCTCAAGGACCCTGGTCCA 1012
Query 1007 ACTGGGAAGCCTTACTCCGCAAGGTACATTGGAAGTTTGGTTGGAGATTTTCACAGGACT 1066
| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGTGGGAAACCTTACTCAGCAAGGTACATTGGAAGTTTGGTTGGAGATTTTCACAGGACT 1072
Query 1067 TTATTGTATGGTGGGATTTACGGGTACCCTCGTGACGCAAAGAGCAAAAATGGAAAACTT 1126
|| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1073 TTGTTGTATGGTGGGATTTACGGGTACCCTCGTGACGCGAAGAGCAAAAACGGAAAGCTT 1132
Query 1127 AGGCTGTTGTATGAGTGTGCACCAATGAGTTTCATTGTTGAACAAGCTGGAGGGAAAGGT 1186
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AGGCTTTTATATGAGTGTGCACCAATGAGTTTCATTGTTGAACAAGCTGGAGGGAAAGGT 1192
Query 1187 TCTGATGGACATTC-GAGAGTACTAGATATCCAACCGACTGAGATACATCAGAGGGTTCC 1245
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1193 TCTGATGGACAC-CAGAGAGTACTAGATATCCAACCGACGGAGATACATCAGAGGGTTCC 1251
Query 1246 TCTATACATTGGAAGCACAGAGGAAGTAGAGAAGCTGGAGAAGTACTTGGCTTGAGTCAT 1305
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1252 ACTATACATTGGAAGCACAGAGGAAGTAGAGAAGCTGGAGAAGTACTTGGCTTGACTCAT 1311
Query 1306 GTACTAAACATAAGCCATTTAATTTCTATTGTAAGCCAGTTTCTGACTACATGGTATATG 1365
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1312 GTACCAAACATAAGCCATTTAATTTCTATTGTAAGCCAATTTCTGACTACATGGTATATG 1371
Query 1366 CAAATAGATGCATAATGGTGAAAGTCCTATTTTGTTGTCAATATCAATATAGAGAAGAAA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1372 GAAATAGATGCATAATGGTGAAAGTCCTATTTTGTTGTCAATATCAATATAGAGAA-A-- 1428
Query 1426 TCAGCTGTTAAAACTATAGACCAAGAAACC-AAGTTTAATT 1465
|||||||||||||| ||||||||| ||||| ||||||||||
Sbjct 1429 TCAGCTGTTAAAACAATAGACCAA-AAACCCAAGTTTAATT 1468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5