BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54190.1 Length=1909 Score E Sequences producing significant alignments: (Bits) Value Ahg938338 jgi|Araly1|938338|scaffold_502529.1 2420 0.0 Ahg934611 jgi|Araly1|934611|scaffold_402599.1 1550 0.0 > Ahg938338 jgi|Araly1|938338|scaffold_502529.1 Length=1451 Score = 2420 bits (1310), Expect = 0.0 Identities = 1402/1447 (97%), Gaps = 3/1447 (0%) Strand=Plus/Plus Query 259 AAGAAGGAAGAATTAGATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG 318 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6 AAGAAGGAAGAAGTAGATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG 65 Query 319 AAGAAGAATTGTGGCTAAGAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAA 378 ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 66 AAGAAGAGTTGTGGCTAAAAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAA 125 Query 379 GCTTCAACGAAGAGAAATCTCTTCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCA 438 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 126 GCTTCAACGGAGAGAAATCTCATCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCA 185 Query 439 AGAGAGATTTCGTAACATGCGTCTCGTGGAGCAATATGATACTCACGATCCTAAA-GGGC 497 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 186 GGAGAGATTTCGTAACATGCGTCTCGTGGAGCAATATGATACTCACGATCC-AAAGGGGC 244 Query 498 ACTGTTTAGTTGCATTACCGTTTTTGATGAAGAGAACTAAAGTTATTGAGATTGTTGCTG 557 ||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 245 ACTGTCTAGTTGCATTACCGTTTTTGATGAAAAGAACTAAAGTTATCGAGATTGTTGCCG 304 Query 558 CAAGGGACATTGTTTTTGCGCTTGCACATTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGT 617 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 305 CCAGGGACATTGTTTTTGCGCTTGCTCATTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGT 364 Query 618 CGAACAAAAGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCATCAGGAGCTTGTTCT 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 CGAACAAAAGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCATCAGGAGCTTGTTCT 424 Query 678 ACAACAAGAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCT 737 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 ACAACAAAAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCT 484 Query 738 CTTTGAAATGCAGATCCACTAGAATTGAGTATATTCTGAGAGGTCAGCCGGATGCAGGGT 797 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 485 CTTTGAAATGCAGATCCACTCGAATTGAGTATATTCTGAGAGGTCAGCCAGATGCAGGGT 544 Query 798 TTGCTCTTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCA 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 TTGCTCTTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCA 604 Query 858 ATGGAAAGGTGCTGACTTATTCTGCGCAGGACAGTGTATACAAGGTGTTTGATCTGAAAA 917 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 605 ATGGAAAGGTGCTGACTTATTCTGCGCAGGACAGTGTGTACAAGGTTTTTGATCTGAAAA 664 Query 918 ACTACACCATGCTATATTCGATATCAGATAAAAATGTCCAGGAAATTAAAATCAGTCCAG 977 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 665 ACTACACAATGCTATATTCGATATCAGATAAAAATGTTCAGGAAATTAAAATCAGTCCAG 724 Query 978 GGATAATGTTATTGATCTTCAAGAGAGCTGCCAGTCATGTTCCTCTGAAGATTCTGTCGA 1037 ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 725 GGATAATGTTACTGATCTTCAAGAGAGCTGCCAGTCACGTTCCTCTGAAGATTCTGTCGA 784 Query 1038 TAGAAGATGGCACTGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTG 1097 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 TAGAAGATGGCACAGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTG 844 Query 1098 ACTTCATTGAACAATTCAATGAGAAACTTCTTGTTAAGCAAGAGAATGAGAATCTTCAAA 1157 | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 845 ATTTCATTGAACAATTCAATGAGAAACTTCTTGTTAAGCAAGAGAATGAGAACCTCCAAA 904 Query 1158 TTCTTGACGTCAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGT 1217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 TTCTTGACGTCAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGT 964 Query 1218 CTGCATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAACCGGAACGTTT 1277 ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 965 CTGCATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAATCGAAATGTTT 1024 Query 1278 CTGTGTGGAACTTTCGCGGAGAGCTCGTTACTTCCTTTGAGGACCATCTTCTATGGCATC 1337 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1025 CTGTGTGGAATTTTCGCGGAGAGCTCGTGACTTCCTTTGAGGACCATCTTCTATGGCATC 1084 Query 1338 CAGACTGTAACACTAATAATATCTACATTACAAGTGATCAAGATCTGATCATCTCGTACT 1397 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1085 CAGACTGTAACACAAATAATATCTACATAACAAGTGATCAAGATCTGATCATCTCGTACT 1144 Query 1398 GCAAAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCGGGATCAATCAATATCAGCA 1457 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1145 GCAAAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCTGGATCGATCAATATCAGCA 1204 Query 1458 ATATATTGACTGGGAAATGCTTAGCTAAAATAACACCAAGCAGTGGGCCTCCAAAAGATG 1517 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 1205 ATATATTGACTGGGAAATGCTTAGCTAAAATTACACCAAGCAGTGGACCTCCAAAAGAAG 1264 Query 1518 ATGAGAGCAGCAGCAGTAATTGTATGGGAAAGAACTCAAAGCAAAGAAGAAACGCTGTAG 1577 |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| Sbjct 1265 ATGAGAGCAGCAGCAGTAGTTGTTTGGGAAAGAACTCAAAGCAAAGAAGAAACGCGGTAG 1324 Query 1578 CTGAAGCTTTGGAAGACATAACCGCTCTTTTCTACGACGAAGAACGCAATGAGATATACA 1637 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1325 CTGAAGCTTTGGAAGACATAACCGCTCTTTTCTATGACGAAGAACGCAATGAGATATACA 1384 Query 1638 CAGGAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGATTTCACAT-ACATCGTCAT 1696 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1385 CAGGAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGATTTCACATTACATCATCAT 1444 Query 1697 CGTTAGC 1703 ||||||| Sbjct 1445 CGTTAGC 1451 > Ahg934611 jgi|Araly1|934611|scaffold_402599.1 Length=1444 Score = 1550 bits (839), Expect = 0.0 Identities = 1230/1418 (87%), Gaps = 29/1418 (2%) Strand=Plus/Plus Query 274 GATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG-A--AGAAGAATTGT 330 ||||||||||||||| || | |||| ||||||||||||||| || | | |||| |||| Sbjct 23 GATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCTTGTAGCGGTAGTAAAAGAGTTGT 82 Query 331 GGCTAAGAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAAGCTTCAACGAAG 390 |||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| | Sbjct 83 TGCTAAGAAGAGGTCTCGTCCCGACGGATTCGTCAATAGCGTTAAAAAGCTTCAACGCCG 142 Query 391 AGAAATCTCTTCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCAAGAGAGATTTCG 450 ||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| || Sbjct 143 AGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACCGCTCAAGAGAGATTCCG 202 Query 451 TAACATGCGTCTCGTGGAGCAATATGATACTCACGATCCTAAAGGGCACTGTTTAGT-TG 509 || ||||||||||||||||||||||| || || ||||||||||| |||||||||| | Sbjct 203 CAATATGCGTCTCGTGGAGCAATATGACACGCATGATCCTAAAGGATACTGTTTAGTAT- 261 Query 510 CATTACCGT-TTTTGATGAAGA-GAA-CTAAAGTTATTGAGATTGTTGCTGCAAGGGACA 566 ||||||| | ||| |||| | ||| | ||||||||||||||||||||||| | |||| Sbjct 262 CATTACC-TAACTTGTTGAA-ACGAAGC-AAAGTTATTGAGATTGTTGCTGCTCGAGACA 318 Query 567 TTGTTTTTGCGCTTGCACAT-TCTGGTGTTTGCGCAGCTTTTAGTAGAGAGTCGAACAAA 625 |||| ||||| ||| | | | ||||||||||| ||| ||||||| |||||| |||| ||| Sbjct 319 TTGTCTTTGCTCTTACTC-TATCTGGTGTTTGTGCATCTTTTAGCAGAGAGACGAATAAA 377 Query 626 AGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCA-TCAGGAGCTTGTTCTACAACAA 684 || | |||||||||||||||||||| |||||||||| || |||| |||||||||||||| Sbjct 378 AGGGTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTC-GGAGTTTGTTCTACAACAA 436 Query 685 GAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCTCTTTGAA 744 |||||||||||||||||| || ||||||||||| || || ||||||| |||||||||||| Sbjct 437 GAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTTTGAA 496 Query 745 ATGCAGATCCACTAGAATTGAGTATATTCTGAGAGGTC-AGCCGGATGCAGGGTTTGCTC 803 |||||||||||||||||| || ||||||||||| |||| || | || ||||| ||| ||| Sbjct 497 ATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAG-CAGACGCAGGATTTCCTC 555 Query 804 TTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCAATGGAA 863 ||||||||||||| ||| |||||||||| |||||||| |||||||||||||| ||||| | Sbjct 556 TTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTTAATGGGA 615 Query 864 AGGTGCTGACTTATTCTGCGCAGGACAGTGTATACAAGGTGTTTGATCTGAAAAACTACA 923 |||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||| Sbjct 616 AGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTCAAAAACTATG 675 Query 924 CCATGCTATATTCGATATCAGATAAAAATGTCCAGGAAATTAAAATCAGTCCAGGGATAA 983 || || |||| ||||||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct 676 CCTTGTTATACTCGATATCAGACAAAAATGTACAGGAAATTAAGATCAGTCCAGGGATAA 735 Query 984 TGTTATTGATCTTCAAGAGAGCTGCCAGTCATGTTCCTCTGAAGATTCTGTCGATAGAAG 1043 |||| ||||| |||||||||||||| |||||||||||| |||||||||| || || |||| Sbjct 736 TGTTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCGAAG 795 Query 1044 ATGGCACTGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGACTTCA 1103 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 796 ATGGCACGGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGATTTCA 855 Query 1104 TTGAACAATTCAATGAGAAA-CTTCTTGTTAAGCAAGAGAATGAGAATCTTCAAATTCTT 1162 |||||||||||||||| ||| ||||| |||||||||||||| |||||||| ||||| ||| Sbjct 856 TTGAACAATTCAATGA-AAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTCCAAATACTT 914 Query 1163 GACGT-CAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGTCTGC 1221 ||||| | ||||||||||||| || |||||||| ||| |||| ||||||||||| || || Sbjct 915 GACGTTC-GAAATGCTGAGCTGATAGAAGTTAGCAGAACTGAATTCATGACACCATCAGC 973 Query 1222 ATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAACCGGAACGTTTCTGT 1281 |||||||||| |||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 974 ATTCATATTTTTGTATGAGAACCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCTGT 1033 Query 1282 GTGGAACTTTC-GCGGAGAGCTCGTTACTTCCTTTGAGGACCATCTTCTATGGCATCCAG 1340 |||||| |||| |||||||||| || || || |||||||| |||||||| |||||||||| Sbjct 1034 GTGGAA-TTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCAG 1092 Query 1341 ACTGTAACACTAATAATATCTACATTACAAGTGATCAAGATCTGATCATCTCGTACTGCA 1400 |||||||||| || ||||||||||| ||||| ||||| |||||||||||||| || |||| Sbjct 1093 ACTGTAACACAAACAATATCTACATAACAAGCGATCAGGATCTGATCATCTCATATTGCA 1152 Query 1401 AAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCGGGATCAATCAATATCAGCAATA 1460 | |||||||| ||||||||||||||||||||||||||||| || || || || ||||||| Sbjct 1153 AGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAATA 1212 Query 1461 TATTGACTGGGAAATGCTTAGCTAAAATAACACCAAGCAGTGGGCCTCCAAAAGATGATG 1520 | |||||||| |||||||||||||| |||| | ||| | ||| ||||| || || || | Sbjct 1213 TCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAAAAATGGCCCTCCTAAGGAAGAAG 1272 Query 1521 AGAGCAGCAGCAGTAATTGTATGGGAAAGAACTCAAAGCAAAGAAGAAACGCTGTAGCTG 1580 | ||||||| ||| ||| | ||| |||||| || | ||| |||| || || |||| Sbjct 1273 ACTGCAGCAGTAGTGATT-T--GGG---GAACTCCAATCGAAGGAGAAGTGCGGTTGCTG 1326 Query 1581 AAGCTTTGGAAGACATAACCGCTCTTTTCTACGACGAAGAACGCAATGAGATATACACAG 1640 | ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 1327 AGGCTTTGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACACAG 1386 Query 1641 GAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGA 1678 |||||||||||||| || | ||||| ||||| |||||| Sbjct 1387 GAAACAGACACGGCTTTCTCCATGTCTGGTCTAATTGA 1424 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71723931335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5