BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54210.1 Length=818 Score E Sequences producing significant alignments: (Bits) Value Ahg485818 jgi|Araly1|485818|fgenesh2_kg.5__1810__AT3G54210.1 1236 0.0 > Ahg485818 jgi|Araly1|485818|fgenesh2_kg.5__1810__AT3G54210.1 Length=832 Score = 1236 bits (669), Expect = 0.0 Identities = 782/834 (94%), Gaps = 18/834 (2%) Strand=Plus/Plus Query 1 ATCCATTCAACACCAGCAAAATCCG-CTTTGTTGCAGAGGATCACAATCTAATGGCGATT 59 |||||||| || |||||||||| || ||||||||||||| |||||| ||||||||||||| Sbjct 1 ATCCATTCGACTCCAGCAAAAT-CGCCTTTGTTGCAGAGAATCACACTCTAATGGCGATT 59 Query 60 CCAATGTCCATGGCAATGGCGACTCCTACAGATTCCGTGAGCAGAGTCTGGAGTATGTCT 119 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 60 CCAATGTCCATGGCAATGGCGACTCCTACAGATTCCGTGAGCAGAGTTTGGAATATGTCT 119 Query 120 TCTCTCAAATCAGCTCTTCCCTCCACCGCATCACTCCGATTACCTTCCTCGTCTTCTCGC 179 |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 120 TCTCTCAAATCAGCTCTTCCCTCCGCCGCATCACTCCGATTACCTTTATCGTCTTCTCGC 179 Query 180 CGTCCGGTTActcttcgtctcccaatctcttctccttcactcccatctttctccggtctc 239 |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 180 CGTCCGGTCACTCTTCGTGTACCAATCTCTTCTCCTTCACTCCCATCTTTCTCCGGTCTC 239 Query 240 tctccggtcaatcctctcctctcAATCGGACTTCCAGATTGGCAAAGCTTTGAGAATGGA 299 |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct 240 TCTCCGGTCAATCCTCTCCTCTCAATTGGACTTCCAGATTGGCAGAGTTTTGAGAATGGG 299 Query 300 TTCAAAATTGTTGACGGTGGTGGTCGTATCTACGCGATGAGACACGGACGACGTGTTCCG 359 ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| Sbjct 300 TTCAAAATTGTTGACGGTGGTGGTCGTGTCTACGCGATGAGACACGGAAGACGAGTTCCG 359 Query 360 AAGCTGAACAGACCACCGGACCAGCGCAAAGCTCT-TCTGCGAGGACTCACGACTCAGCT 418 ||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||| Sbjct 360 AAGTTGAACAGACCACCGGACCAGCGTAAAGCTCTAT-TGCGAGGACTCACGACTCAGCT 418 Query 419 TCTTAAGCATGGGAGAATCAAGACGACTCGAGCTAGAGCTAGTGCGATGAGGAAGTTCGT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TCTTAAGCATGGGAGAATCAAGACGACTCGAGCTAGAGCTAGTGCGATGAGGAAGTTCGT 478 Query 479 TGACAAGATGATTACATTGGCTAAAGACGGTTCGTTGCACAAGCGAAGACAAGCCTTGGG 538 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 479 TGACAAGATGATTACATTGGCTAAAGACGGTTCGTTGCATAAGCGAAGACAAGCCTTGGG 538 Query 539 ATATATCTACGAGAAACAGATTGTTCACGCTCTGTTTGCTGAGGTTCCTGATAGATACGG 598 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 539 ATATATCTACGAGAAGCAGATTGTTCACGCTCTGTTTGCAGAGGTTCCTGATAGATACGG 598 Query 599 TGAGAGAAACGGTGGATACACGAGGATCATCAGAACTCTTCCAAGGAGAGGTGATAATGC 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TGAGAGAAACGGTGGATACACGAGGATCATCAGAACTCTTCCAAGGAGAGGTGATAATGC 658 Query 659 TCCAATGGCTTACATTGAGCTTGTCTAAGGTCAATATCTCT-TTTATTT--T-GCTCAAT 714 ||||||||||||||||||||||||||||||||||| ||||| ||| ||| | ||| ||| Sbjct 659 TCCAATGGCTTACATTGAGCTTGTCTAAGGTCAATTTCTCTGTTTCTTTAATTGCTAAAT 718 Query 715 TGTTTCACTTTTGCTCTGTAATAT---TG-AAAAACAGTTGTTGATGCAGATATGAGATC 770 ||||| ||||||| |||||||||| | |||||||||||||||||||||||||||||| Sbjct 719 TGTTTGACTTTTGTTCTGTAATATCAATCTAAAAACAGTTGTTGATGCAGATATGAGATC 778 Query 771 ATTTTGTTTTGT----GAGC-TTCAA-TTGGTAAAAATGCTTTCTTTAGAGTTG 818 |||||||| ||| ||| ||| | ||| ||||||||||||||||||||||| Sbjct 779 ATTTTGTTATGTTATTGAGAATTCGACTTGTTAAAAATGCTTTCTTTAGAGTTG 832 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30231473181 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5