BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54360.1
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485837 jgi|Araly1|485837|fgenesh2_kg.5__1829__AT3G54360.1 2002 0.0
> Ahg485837 jgi|Araly1|485837|fgenesh2_kg.5__1829__AT3G54360.1
Length=1460
Score = 2002 bits (1084), Expect = 0.0
Identities = 1304/1403 (93%), Gaps = 43/1403 (3%)
Strand=Plus/Plus
Query 119 GACGACTTCTGTTTGCCCGTTCTCGAAAGCTGCTCGTCCTGACGATGGGT-CGACTCGAA 177
|||||||||||||||||| |||||||||||||||||||||||||||| | || ||||||
Sbjct 3 GACGACTTCTGTTTGCCCTTTCTCGAAAGCTGCTCGTCCTGACGATGCTTCCG-CTCGAA 61
Query 178 AACAAGGCGAAATTACCGCTTCTGGTTGTCCTTTTTCTAAAGCTGCTCGTCCCGACGATG 237
|||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 62 AACAAGGCGATACGGCGGCTTCTGGTTGCCCTTTTTCTAAAGCTGCTCGTCCCGACGATG 121
Query 238 CCTCTGCTCGAAAGCAAGGGGAAACGACGGCTTCTGGTTGCCCTTTTTCTAAA--T-CT- 293
| ||||||||||| ||||| |||| ||||||||||||||||||||||||||| | ||
Sbjct 122 CTTCTGCTCGAAAACAAGGCGAAATTACGGCTTCTGGTTGCCCTTTTTCTAAAGCTGCTC 181
Query 294 G--CT--CG-T--C-CTG-ACG-AA-AATG--G-----G--AGTAAAGGATGTCCTGAAC 333
| || | | | ||| ||| || || | | | | |||||||||||| ||||
Sbjct 182 GTCCTGATGATGCCTCTGCACGAAAGAAAGACGAAATTGCAACTAAAGGATGTCCCGAAC 241
Query 334 AAGAAGGAAACTTGAATAAGGACTCTACTGATTCTGCAACGGTACCTGCCAAGTGCCCTT 393
| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 242 ACGAAGGAAAATTGAATAAGGACTCTACTGATTCTGCAACTGTGCCTGCCAAGTGCCCCT 301
Query 394 TTGGCTATGACTCTCAAACATTCAAGCTTGGGCCTTTTAGCTGTATGTTATGTCAAGCAC 453
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 302 TTGGTTATGACTCTCAAACATTCAAGCTTGGGCCTTTTAGCTGTATGCTATGTCAAGCAC 361
Query 454 TTCTATATGAGAGCAGTAGATGTGTGCCTTGCACACATGTGTTCTGCAAAGTATGCTTAA 513
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 362 TTCTATATGAGAGCAGTAGATGTGTACCTTGCACACATGTGTTTTGCAAAGTGTGCTTAA 421
Query 514 CACGGTTTAAGGACTGCCCTCTATGCGGTGCTGACATTGAAAGTATTGAAGTTGATGAAA 573
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 422 CACGGTTTAAGGACTGCCCTCTTTGCGGTGCTGACATTGAAAGTATTGAAGCTGATGAAA 481
Query 574 ACCTTCAGAAGATGGTTGATCAATTTATTGAAGGCCATGCTAGAATTAAGAGATCTGTCG 633
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 482 ACCTACAAAAGATGGTTGATCAATTTATTGAAGGCCATGCTAGAATCAAGAGATCTATCG 541
Query 634 TCAATGGAACAGAAAAAGAAGAGGTCGAAAATGATAACAAAAAAGTGATTTACGCTGACG 693
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 542 TCAATGGAACAGAAAAAGAAGAGATTGAAAATGATAACAAAAAAGTGATTTACGCTGATG 601
Query 694 TTTCCATGGAAAGAGGTTCTTTCTTGGTGCAACAAGCTATGAGGGCATTTAGTGCCCAAA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTTCCATGGAAAGAGGTTCTTTCTTGGTGCAACAAGCTATGAGGGCATTTAGTGCCCAAA 661
Query 754 ATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGTACCGAGGACATTCGGGATCAACTAG 813
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 662 ATTATGAAAGTGCTAAATCAAGGTTGGCAATGTGTACCGAGGATATTCGGGATCAACTAG 721
Query 814 GGAGGGAGGGCAATACACCAGAGTTGTGTTCACAGCTTGGTGCAGTCCTTGGCATGCTTG 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GGAGGGAGGGCAATACACCAGAGTTGTGTTCACAGCTTGGTGCAGTCCTTGGCATGCTTG 781
Query 874 GTGACTGTAGCCGAGCGATGGGAGACTCAAGCTCTGCAGTCAAGCATTTTGAAGAGAGTG 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GTGACTGTAGCCGAGCGATGGGAGACTCAAGCTCTGCAGTCAAGCATTTTGAAGAGAGTG 841
Query 934 TTGAATTCCTTATGAAACTGCCGTTGAATGATTTGGAGATTACACATACACTTTCTGTCT 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TTGAATTCCTTATGAAACTGCCGTTGAATGATTTGGAGATTACACATACACTTTCTGTCT 901
Query 994 CACTCAATAAAATAGGAGATCTAAAATATTATGACGAAGATCTACAAGCTGCAAGGTCGT 1053
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 902 CACTCAATAAAATAGGAGATCTTAAATATTATGACGAAGATCTACAAGCTGCAAGGTCGT 961
Query 1054 ATTATGATAGAGCTTTAAATGTCAGACGTGATGCAATGAAGCACCACCCAAATGCTCCTT 1113
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 962 ATTATGATAGAGCTTTAAATGTCAGACGTGATGTAATGAAGCATCACCCAAATGCTCCTT 1021
Query 1114 CACAAATTCTGGATGTGGCTGTTTCCTTAGCCAAAGTTGCGGATATAGACAGGACTCTAC 1173
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CACAAATTCTGGATGTGGCAGTTTCCTTAGCCAAAGTTGCGGATATAGACAGGACTCTAC 1081
Query 1174 AAAATGAAGTTGCAGCGACAGATGGGTTCAAGGAAGGCATGAGACTGCTGGAATCTTTGA 1233
|||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1082 AAAATGAAGTTGCAGCAACAGATGGTTTCAAGGAAGGCATGAAACTGCTGGAATCTTTGA 1141
Query 1234 AACTGGACTCTGAAGATTCTGCTCTCGAGCAACGGCGGCTCTCTGTACTGGAGTTCCTTA 1293
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1142 AACTGGACTCTGAAGATTCTGCTCTCGAGCAACGACGGCTCTCTGTGCTGGAGTTCCTTA 1201
Query 1294 AGAAGCAAGTAGAA-A-CC-GA----T--GCTGAAACTGCACTCTAAACCGATGCAGGCT 1344
||||||||||||| | || || | || |||||||||||||||| ||||||| |||
Sbjct 1202 AGAAGCAAGTAGAGTAGCCTGAACAGTATGCAGAAACTGCACTCTAAATCGATGCATGCT 1261
Query 1345 TAAGTACGTATATAGAAATTATACCTAAGTTCTCGTCTGTGGCATTTTGCTGAATAAA-G 1403
|| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 1262 TATGTACGTATATAGAAATTATACCTAAGCTCTCCTCTGTGGCATTTTGCTGAATAAAAG 1321
Query 1404 AA--AG----CAAAAA-TGTTGTATTTGCGCTCAAGGGACAAAGAAACAGAGTTGTCTGT 1456
|| || |||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1322 AACGAGAAAGCAAAAAATGTTGTATTTGCGCTTAAGGGACAAAGAAACAGAGTGGTCTGT 1381
Query 1457 ATGTTGTGAATTGTGATGGTTTT 1479
|||||||||||||||||||||||
Sbjct 1382 ATGTTGTGAATTGTGATGGTTTT 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59801684650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5