BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54390.1 Length=1341 Score E Sequences producing significant alignments: (Bits) Value Ahg485840 jgi|Araly1|485840|fgenesh2_kg.5__1832__AT3G54390.1 1506 0.0 > Ahg485840 jgi|Araly1|485840|fgenesh2_kg.5__1832__AT3G54390.1 Length=1238 Score = 1506 bits (815), Expect = 0.0 Identities = 930/985 (94%), Gaps = 10/985 (1%) Strand=Plus/Plus Query 244 CTTGTCTCTGTTTTTAGTCACCTGAAGAAAAAATATATGGAGAACGGAGAATCTAACCAA 303 |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 167 CTTGTCTCTGTTTTAACTCACCTGAAGAAAAAATATATGGAGAACGGAGAATTTAACCAA 226 Query 304 GAAAATCTCAAATCTCTCAACCACGACGAATCGCT-TAAGAAGCCATCTGCTTCCTCCGT 362 |||||||||||||||||||||||||||||||| | |||||| || |||||||||||||| Sbjct 227 GAAAATCTCAAATCTCTCAACCACGACGAATC-ATCTAAGAAACCCTCTGCTTCCTCCGT 285 Query 363 CGTTGTAGATAGGTTAAAACGTGATGAATGGAGCGAAGGAGCTGTTTCGACTTTACTCGA 422 |||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| || Sbjct 286 CGTTGTGGATAGGTTAAAGCGTGATGAATGGAGCGAAGGAGCTGTTTCGAGTTTACTTGA 345 Query 423 AGCTTATGAGTCAAAATGGGTTCTCAGAAACAGAGCCAAGCTTAAGGGACAAGACTGGGA 482 ||| || |||||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct 346 AGCCTACGAGTCAAAATGGGTTCTCAGGAACAGAGCCAAGCTCAAGGGTCAGGACTGGGA 405 Query 483 AGACGTGGCTAAACACGTGTCCTCACGCGCCACTCACACCAAGTCACCAAAGACTCAGAC 542 ||||||||||| |||||||||||||||||||||||| |||||||| || |||||||| || Sbjct 406 AGACGTGGCTAGACACGTGTCCTCACGCGCCACTCAAACCAAGTCTCCGAAGACTCAAAC 465 Query 543 TCAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGGTACCGTTCTGAGTCCGCTACTGC 602 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 ACAGTGCAAGAACAAGATCGAGTCCATGAAGAAACGGTACCGTTCTGAGTCCGCTACTGC 525 Query 603 TGATGGCTCCTCTTGGCCTCTTTATCCTCGTCTTGATCATCTCCTACGTGGAACTC-AGC 661 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || Sbjct 526 TGATGGCTCCTCTTGGCCTCTTTATTCTCGTCTTGATCATCTCCTCCGTGGAACTCAAG- 584 Query 662 CTC-AGCCTCAGCCTCAAGCTGTTCTGCCTCTGAATTGCTCTGTTCCTCTGCTCTTACTT 720 ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 585 CTCAAG-CTCAGCCTCAGGCTGTTCTGCCTCTGAATTGCTCTGTTCCTCTGCTCTTACTC 643 Query 721 GAGCCGCCGTTGCCTGCGGTGGCTCATCCGCCGCAGATTTCTTACGGATCCAACGGCGTC 780 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 644 GAGCCGCCGTCGCCTGTGGTGGCTCATCCGCCGCAGATTTCTTACGGATCCAACGGCGTC 703 Query 781 GGCAAGATTCCTAAGGAAGACGGATTCAAGCCGGAG-AACAAACCGGAAAAAGATG-CGG 838 |||||||||||||||||||| ||||||||||||||| || || |||||||||| | ||| Sbjct 704 GGCAAGATTCCTAAGGAAGATGGATTCAAGCCGGAGCAA-AAGCCGGAAAAAG-CGACGG 761 Query 839 AGATGGATACAGACAGTAGTACGCCTGTGGTTAAAACgaaggtgagagggaagaaagtga 898 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 762 AGATGGACACAGACAGTAGTACGCCGGTGGTTAAAACGAAGGTGAGAGGGAAGAAAGTGA 821 Query 899 agagaagatataaagaagagaaggaagagaTCGCCGGAAGTATACGGTGGTTAGCGGAGG 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 AGAGAAGATATAAAGAAGAGAAGGAAGAGATCGCCGGAAGTATACGGTGGTTAGCGGAGG 881 Query 959 TGGtgatgagatcagagagagcaagaatggagacgatgaaagagatagagagaatgagag 1018 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 TGGTGATGAGATCTGAGAGAGCAAGAATGGAGACGATGAAAGAGATAGAGAGAATGAGAG 941 Query 1019 ctgaagctgaagctaagagaggagaaTTGGATTTGAAACGGACGGAGATAATGGCGAATA 1078 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 942 CTGAAGCTGAAGCTAAGAGAGGAGAAATGGATTTGAAACGAACGGAGATAATGGCGAATA 1001 Query 1079 CTCAGCTAGAGATTGCTAGAATCTTTGCTGCTGCAGCTTCTTCTGGACAGAACAAAGGTG 1138 |||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||| Sbjct 1002 CTCAGCTAGAGATTGCTAGACTCTTTGCAGTTGCAGCTTCGTCTGGACAGAACAAAGGTG 1061 Query 1139 TTGATTCTTCATTAAGGATCGGAAGAAATTGAGTTCTGCTTTTTATATTGGAGACTCAAG 1198 |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 1062 TTGATTCTTCATTAAGGATCGGAAGAAATTGAGTTCTGTTTTTTTTATGGGAGACTCAAA 1121 Query 1199 ATGTTGTGTGTACATACCAAGTGTT 1223 |||| |||||||||||||||||||| Sbjct 1122 ATGTCGTGTGTACATACCAAGTGTT 1146 Score = 265 bits (143), Expect = 7e-70 Identities = 164/174 (94%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 40 TTAGCTTTAAGTCACGAGGCACGACCATTGAACATGCGAGAAACGCGTGTACCCAAACTC 99 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 1 TTAGCTTTAAGTCACGAGTCACGACCATTGAACATGCAAGAAACGCGTGTACCCAAACTC 60 Query 100 ATTGGTTAGTTTTGAGAGCAGCAGCGTATTCTTACACAGTTCTCATATGTTTAACTCCAT 159 ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| Sbjct 61 ATTGGTTAGTTTTGAGACCAGCAGCGAATTCTTACACAGTTCTCATATGTTAAACTCCAT 120 Query 160 TCACTCTCTCAAAAGGTTCCCATCTTTATCAAAAGACTTGCTAAAATCTTCTCT 213 |||||||||||||| |||||||||| ||||||| |||||||||||| ||| ||| Sbjct 121 TCACTCTCTCAAAAAGTTCCCATCTCTATCAAACGACTTGCTAAAA-CTTGTCT 173 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50169758772 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5