BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54400.1 Length=1554 Score E Sequences producing significant alignments: (Bits) Value Ahg938360 jgi|Araly1|938360|scaffold_502551.1 2220 0.0 > Ahg938360 jgi|Araly1|938360|scaffold_502551.1 Length=1318 Score = 2220 bits (1202), Expect = 0.0 Identities = 1280/1318 (97%), Gaps = 4/1318 (0%) Strand=Plus/Plus Query 26 AAATCAAGGTCTTAAACAATGAGATCCCATCTCTTGATTTTGTTAATCTCTCTCTTAATC 85 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 AAATCAAGATCTTAAACAATGAGATCCCATCTCTTGATTTTGTTAATCTCTCTCTTAATC 62 Query 86 TTGAAATCTGAATCCATAAACTGCAATGAAAAGAGCCATTCCTCAGATCTAAGAGTGTTC 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TTGAAATCTGAATCCATAAACTGCAATGAAAAGAGCCATTCCTCAGATCTAAGAGTGTTC 122 Query 146 CACATTAACAGTCTATGTTCTCCATTCAAAACTTCTGTTTCATGGGCAGATACACTTCTT 205 ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 123 CACATTAACAGTCAATGTTCTCCATTCAAAACTTCTGTCTCATGGGAAGATACACTTCTT 182 Query 206 CAAGATAAGGCTCGTTTCCTATACTTGTCAAGCCTCGCTGGCGTTAGGAAATCATCAGTT 265 ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 183 CAAGACAAGGCTCGTTTCCTATACTTGTCAAGCCTCGCCGGCGTTAAGAAATCATCAGTC 242 Query 266 CCAATCGCCTCTGGTCG-GGCCATCGTTCAGAGCCCGACTTACATCGTGAGGGCTAACAT 324 ||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| Sbjct 243 CCAATCGCCTCTGGTCGCGGC-ATCGTTCAGAGCCCGACTTATATCGTGAGGGCTAACAT 301 Query 325 CGGGACACCGGCTCAGCCCATGCTCGTGGCTCTTGACACTAGCAATGACGCTGCTTGGAT 384 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 CGGGACACCGGCTCAGGCCATGCTCGTGGCTCTTGACACTAGCAATGACGCTGCTTGGAT 361 Query 385 TCCTTGTTCTGGCTGCGTTGGCTGTTCTTCCTCTGTTCTCTTTGACCCTTCCAAGTCAAG 444 |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 362 TCCTTGTTCTAGCTGCGTTGGTTGTTCTTCCTCAGTTCTCTTTGACCCTTCCAAGTCAAG 421 Query 445 CTCCTCTCGTACTCTTCAATGCGAAGCTCCTCAGTGTAAACAGGCTCCAAATCCAAGTTG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 CTCCTCTCGTACTCTTCAATGCGAAGCTCCTCAGTGTAAACAGGCTCCAAATCCAAGTTG 481 Query 505 CACAGTAAGCAAATCATGTGGTTTCAACATGACCTACGGTGGTTCAACCATCGAAGCATA 564 ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 482 CACCGTAAGCAAATCATGTGGTTTCAACATGACCTACGGTGGTTCAGCAATCGAAGCATA 541 Query 565 TCTGACACAAGACACACTAACATTGGCCAGTGACGTCATCCCAAACTACACCTTTGGGTG 624 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 542 TCTGACACAAGACACACTAACATTGGCCACTGACGTCATCCCAAACTACACCTTTGGGTG 601 Query 625 CATCAACAAAGCTAGTGGAACATCGTTGCCAGCGCAAGGACTCATGGGCTTAGGTCGTGG 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 CATCAACAAAGCTAGTGGAACATCGTTGCCAGCGCAAGGACTCATGGGCTTAGGTCGTGG 661 Query 685 TCCATTGTCTTTAATCTCACAGTCACAAAATCTTTATCAGTCTACATTCTCGTATTGCTT 744 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 662 TCCATTGTCTTTAATCTCACAGTCACAAAATCTTTACCAGTCTACATTCTCGTATTGCTT 721 Query 745 GCCTAATAGTAAGTCCAGCAATTTCTCCGGATCACTAAGATTGGGACCTAAGAACCAACC 804 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 722 GCCTAATAGTAAGTCCAGCAATTTCTCCGGATCGCTAAGATTGGGACCTAAGAACCAACC 781 Query 805 GATCCGGATCAAGACCACTCCATTGTTAAAGAACCCTAGAAGATCATCGCTTTACTATGT 864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 GATCCGGATCAAGACCACTCCATTGTTAAAGAACCCTAGAAGATCATCGCTTTACTATGT 841 Query 865 TAACTTGGTTGGGATTCGTGTCGGAAACAAAATTGTGGATATTCCTACAAGTGCACTCGC 924 |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 842 TAACTTGGTTGGAATTCGTGTCGGGAATAAAATTGTGGATATTCCTACAAGTGCACTAGC 901 Query 925 CTTTGATCCGGCCACCGGAGCCGGCACCATCTTTGACTCGGGGACGGTCTACACAAGGCT 984 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 902 CTTTGATCCGGCCACCGGAGCCGGCACCATCTTTGACTCCGGGACGGTCTACACGAGGCT 961 Query 985 AGTCGAACCAGCTTACGTGGCGGTGAGAAACGAGTTCAGGAGACGTGTTAAGAACGCAAA 1044 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 962 AGTCGAACCAGCTTACGTGGCGGTGAGAAACGAGTTCAGGCGACGAGTTAAGAACGCAAA 1021 Query 1045 CGCAACTTCACTAGGAGGTTTCGACACATGCTACTCCGGCTCCGTCGTGTTCCCGTCGGT 1104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 CGCAACTTCACTAGGAGGTTTCGACACATGCTACTCCGGCTCCGTCGTGTTCCCGTCGGT 1081 Query 1105 GACGTTTATGTTCGCCGGAATGAACGTGACTCTGCCTCCAGACAACCTTCTCATCCACAG 1164 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1082 GACGTTTATGTTCGCCGGAATGAACGTGACTCTGCCTCCGGACAACCTTCTCATCCACAG 1141 Query 1165 CTCCGCAGGTAACCTCAGCTGCCTCGCCATGGCTGCAGCTCCGGTCAACGTTAACTCTGT 1224 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1142 CTCCGCAGGTAACCTCAGCTGCCTCGCCATGGCTGCAGCTCCGACCAACGTTAACTCTGT 1201 Query 1225 CCTTAACGTCATCGCTAGTATGCAGCAACAGAACCACCGAGTTCTCATCGACGTTCCAAA 1284 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1202 CCTTAACGTCATCGCTAGTATGCAACAACAGAACCACCGTGTTCTCATCGACGTTCCAAA 1261 Query 1285 TTCCAGGCTCGGAATTTCCCGTGAAACTTGCACCTAAGttttatcg-atttgtatttt 1341 |||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||| Sbjct 1262 TTCCAGGCTCGGCATTTCCCGTGAAACTTGCACCTAAGTTTTATCGGATT-GTGTTTT 1318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58201894360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5