BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54420.1 Length=876 Score E Sequences producing significant alignments: (Bits) Value Ahg485842 jgi|Araly1|485842|fgenesh2_kg.5__1834__AT3G54420.1 1338 0.0 > Ahg485842 jgi|Araly1|485842|fgenesh2_kg.5__1834__AT3G54420.1 Length=865 Score = 1338 bits (724), Expect = 0.0 Identities = 818/865 (95%), Gaps = 0/865 (0%) Strand=Plus/Plus Query 11 CTCAACAACATCAAAATGTTGACTCCCACCATTTCTAAATCCATCTCTTTAGTAACCATT 70 |||||||| |||||||||||||||| ||| ||||||||| |||||||||| ||||||||| Sbjct 1 CTCAACAAAATCAAAATGTTGACTCACACAATTTCTAAAGCCATCTCTTTGGTAACCATT 60 Query 71 CTATTAGTTCTACAAGCTTTCTCTAACACAACAAAGGCTCAAAATTGCGGTTGTTCGTCA 130 ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||| Sbjct 61 CTATTAGCTCTACAAGCTTTCTATATCACAACAAAGGCTCAAAACTGCGGTTGTTCGTCA 120 Query 131 GAGCTATGTTGTAGTCAGTTTGGCTTTTGCGGTAACACTTCAGACTATTGTGGTGTAGGT 190 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAGCTATGCTGTAGTCAGTTTGGCTTTTGCGGTAACACTTCAGACTATTGTGGTGTAGGT 180 Query 191 TGCCAACAAGGACCTTGTTTTGCTCCTCCCCCTGCAAATGGTGTCTCTGTGGCTGAGATT 250 ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 181 TGCCAACAAGGGCCTTGTTTTGCTCCTCCTCCTGCTAATGGTGTGTCTGTGGCTGAGATT 240 Query 251 GTAACGCAAGAATTCTTCAATGGAATCATCAGTCAAGCCGCGTCTAGTTGCGCCGGCAAT 310 || |||||||| || |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 241 GTTACGCAAGATTTTTTCAATGGAATCATTAGTCAAGCCGCGTCTAGTTGCGCAGGCAAT 300 Query 311 AGATTTTACAGTCGGGGAGCTTTTCTTGAGGCCTTAGACTCATATTCTCGTTTCGGTAGA 370 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGTTTTTACAGTCGAGGAGCTTTTCTTGAGGCCTTAGACTCATATTCTCGTTTCGGTAGA 360 Query 371 GTTGGATCGACCGACGACTCTAGGCGTGAGATTGCAGCGTTCTTTGCTCATGTCACACAT 430 ||||||||||| || |||||||| |||||||| |||||||||||||||||||| || ||| Sbjct 361 GTTGGATCGACTGATGACTCTAGACGTGAGATCGCAGCGTTCTTTGCTCATGTTACGCAT 420 Query 431 GAAACAGGACATTTCTGCTACATAGAAGAGATAGACGGAGCCTCAAAGGATTACTGCGAC 490 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 421 GAAACTGGACATTTCTGCTACATAGAAGAGATAGACGGAGCCGCAAAGGATTACTGCGAC 480 Query 491 GAGAATGCAACACAATATCCATGCAATCCTAACAAAGGCTACTACGGCCGCGGACCGATC 550 |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 481 GAGAATTCAACGCAATATCCATGCAATCCTAACAAAGGCTATTACGGCCGCGGACCGATC 540 Query 551 CAACTCTCTTGGAATTTCAACTACGGGCCAGCCGGGACAGCAATTGGTTTCGACGGCCTG 610 |||||||||||||||||||||||||||||||| || || ||||||||||| |||||||| Sbjct 541 CAACTCTCTTGGAATTTCAACTACGGGCCAGCTGGAACCGCAATTGGTTTTGACGGCCTC 600 Query 611 AATGCACCGGAAACAGTAGCCACGGATCCAGTCATATCCTTCAAAACCGCCTTGTGGTAC 670 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct 601 AATGCACCGGAAACAGTAGCCACAGATCCGGTCATATCCTTCAAGACCGCCTTGTGGTAC 660 Query 671 TGGACCAATAGGGTTCAGCCTGTTATCTCTCAAGGTTTTGGTGCAACAATCCGTGCCATT 730 ||||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 661 TGGACAAATCGGGTTCAGCCTGTTCTCTCTCAAGGTTTTGGTGCAACAATCCGAGCCATT 720 Query 731 AACGGTGCTTTGGAGTGTGACGGGGCCAACACAGCCACCGTTCAAGCTAGAGTTCGTTAC 790 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AACGGTGCTTTAGAGTGCGACGGGGCCAACACAGCCACCGTTCAAGCTAGAGTTCGTTAC 780 Query 791 TACACGGATTATTGTCGTCAACTTGGCGTTGATCCTGGAAACAACCTCACTTGCTAACAA 850 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TACACGGATTATTGTCGTCAACTTGGCGTTGATCCTGGAAACAACCTCACTTGCTAACAA 840 Query 851 AAACATCTATTTCTCTGTATACATA 875 |||||||||||||| |||||||||| Sbjct 841 AAACATCTATTTCTTTGTATACATA 865 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32442602367 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5