BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54470.1 Length=1679 Score E Sequences producing significant alignments: (Bits) Value Ahg938367 jgi|Araly1|938367|scaffold_502558.1 2433 0.0 Ahg937102 jgi|Araly1|937102|scaffold_501293.1 97.1 4e-19 > Ahg938367 jgi|Araly1|938367|scaffold_502558.1 Length=1473 Score = 2433 bits (1317), Expect = 0.0 Identities = 1422/1474 (96%), Gaps = 1/1474 (0%) Strand=Plus/Plus Query 38 CCAAAAGCAGCAGAAGAAAAAATGTCAGCCATGGAAGCACTGATTCTCCAGCTGCATGAA 97 |||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| Sbjct 1 CCAAAAGCAGCAGAAG-AAAAATGTCAGCCATGGAAGCACTGATTCTCCAGCTCCACGAA 59 Query 98 ATCGGCGCCGTGAAATTCGGCAATTTCAAGCTCAAATCTGGAATCTTTTCTCCGGTTTAC 157 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 60 ATCGGCGCCGTGAAATTCGGCAACTTCAAGCTCAAATCCGGAATCTTTTCTCCGGTTTAC 119 Query 158 ATCGACCTTCGtctcatcgtctcttatccatccctcttaacacagatctctcaaactctc 217 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ATCGACCTCCGTCTCATCGTCTCTTATCCATCCCTCTTAACACAGATCTCTCAAACTCTC 179 Query 218 atctcttctcttCCACCTTCTGCAACCTTCGACGTCGTCTGTGGTGTTCCTTACACTGCT 277 |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| Sbjct 180 ATCTCTTCTCTTCCACCTTCCGCAACCTTCGACGTCATCTGTGGTGTCCCTTACACTGCC 239 Query 278 CTCCCTATCGCCACTGTTGTCTCTGTTTCCAATGGTATCCCTATGCTTATGCGGCGTAAG 337 |||||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||| Sbjct 240 CTCCCTATCGCCACCGTCGTCTCTGTTTCCAATGGTATCCCCATGCTTATGCGTCGCAAG 299 Query 338 GAGATTAAAGACTATGGAACATCTAAAGCTATTGAAGGAATCTTCGAAAAGGATCAAACT 397 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 300 GAGATTAAAGACTATGGAACATCCAAAGCTATTGAAGGAATCTTCGAAAAGGATCAAACT 359 Query 398 TGTTTGATAATTGAAGATCTTGTAACTAGTGGTGCTTCTGTTCTCGAGACTGCTGCTCCT 457 ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||| Sbjct 360 TGTTTGATAATCGAAGATCTTGTAACCAGTGGTGCCTCTGTTCTTGAGACTGCTGCGCCT 419 Query 458 CTTCGTGCTGTGGGGTTAAAGGTTAGTGACGCGGTGGTTTTGATTGATAGGCAACAAGGG 517 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 420 CTTCGTGCTGTGGGGTTAAAGGTTAGTGACGCGGTGGTTTTGATCGATAGGCAACAAGGT 479 Query 518 GGTAGGGAGAATCTAGCGGAGAATGGGATTAAGTTACATTCGATGATTATGTTGACGGAT 577 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 480 GGTAGGGAGAATCTGGCGGAGAATGGGATTAAGTTACATTCGATGATTATGTTAACGGAT 539 Query 578 ATGGTTAGGGTTTTGAAGGAAAAGGGGAAAATTGAAGTGGAGGTTGAAGTGAATTTGCTT 637 |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| Sbjct 540 ATGGTTAGGGTTTTGAAGGAAAAGGGCAAAATTGAAGAGGAGGTTGAAGTCAATTTGCTT 599 Query 638 AAGTTTTTGGAAGAGAATCGTAGGGTTAGTGTTCCAAGTGTGGAGAAACCTAAGCCTAAG 697 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 600 AAGTTTTTGGAAGAGAATCGTAGGGTTAGTGTTCCAAGTGTGGAGAAACCGAAGCCTAAG 659 Query 698 CCTAGGGTTTTGGGGTTCAAGGAAAGGTCTGAGCTTTCTAAGAATCCGACAGGGAAGAAG 757 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 660 CCTAGGGTTTTGGGGTTCAAGGAAAGGTCTGAGCTTTCCAAGAATCCTACGGGGAAGAAG 719 Query 758 CTGTTTGATATTATGTTGAAGAAGGAAACCAATCTTTGTTTAGCTGCTGATGTTGGAACT 817 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 720 CTGTTTGATATTATGTTGAAGAAGGAAACCAATCTTTGCTTAGCTGCTGATGTTGGAACT 779 Query 818 GCTGCTGAATTGCTTGACATCGCAGATAAGGTGGGACCAGAGATTTGTCTCTTGAAGACT 877 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 780 GCTGCTGAATTGCTTGACATCGCCGATAAGGTGGGACCAGAGATCTGTCTCTTGAAGACT 839 Query 878 CATGTTGATATACTGCCTGATTTCACCCCTGACTTTGGCTCTAAGCTCCGTGCGATTGCA 937 ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 840 CATGTTGATATTTTGCCTGATTTCACCCCTGACTTTGGCTCTAAACTCCGGGCGATCGCA 899 Query 938 GACAAGCACAAATTTCTCATATTTGAGGATCGCAAGTTTGCAGACATTGGTAACACTGTC 997 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 900 GACAAGCACAATTTTCTCATATTTGAAGATCGCAAGTTTGCAGACATTGGTAACACTGTC 959 Query 998 ACTATGCAGTATGAAGGAGGCATCTTTAAAATATTGGAGTGGGCTGATATTATCAACGCT 1057 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 960 ACTATGCAGTATGAAGGAGGCATCTTTAAAATATTGGAGTGGGCTGATATTGTAAACGCT 1019 Query 1058 CATGTAATATCGGGGCCAGGAATCGTGGATGGCCTGAAATTGAAGGGTATGCCTCGTGGT 1117 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 CATATAATATCGGGGCCAGGAATCGTGGATGGCCTGAAATTGAAGGGTATGCCTCGTGGT 1079 Query 1118 AGAGGTTTGCTTTTGCTTGCTGAAATGAGCTCTGCAGGTAACCTGGCTACAGGAGACTAC 1177 |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1080 AGAGGTCTGCTTTTGCTTGCTGAAATGAGCTCTGCGGGTAACCTTGCTACAGGAGACTAC 1139 Query 1178 ACTGCAGCAGCTGTGAAAATCGCAGACGCTCATTCTGATTTTGTGATGGGATTCATCTCG 1237 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 ACTGCAGCAGCCGTGAAAATCGCAGACGCTCATTCTGATTTTGTGATGGGATTCATCTCG 1199 Query 1238 GTGAATCCAGCATCTTGGAAATGCGGGTATGTGTATCCGTCTATGATTCATGCAACACCT 1297 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1200 GTGAATCCGGCATCTTGGAAATGCGGATATGTGTATCCGTCTATGATTCATGCAACACCT 1259 Query 1298 GGTGTTCAAATGGTGAAAGGTGGTGATGCACTTGGTCAGCAGTATAACACTCCACACTCT 1357 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1260 GGTGTTCAAATGGTGAAAGGTGGTGATGCACTTGGTCAACAGTATAACACTCCACACTCT 1319 Query 1358 GTGATTACTGAGAGGGGAAGTGATATTATAATCGTGGGACGGGGAATCATAAAGGCGGAA 1417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GTGATTACTGAGAGGGGAAGTGATATTATAATCGTGGGACGGGGAATCATAAAGGCGGAA 1379 Query 1418 AACCCAGCAGAGACGGCTCATGAGTATAGAGTTCAAGGATGGAATGCATACTTGGAGAAA 1477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 AACCCAGCAGAGACGGCTCATGAGTATAGAGTTCAAGGATGGAATGCATACTTGGAGAAA 1439 Query 1478 TGCTCTCAGTAGATTCGATCCTGAGAGATGGCTG 1511 |||||||||||||||||||||||||||||||||| Sbjct 1440 TGCTCTCAGTAGATTCGATCCTGAGAGATGGCTG 1473 > Ahg937102 jgi|Araly1|937102|scaffold_501293.1 Length=246 Score = 97.1 bits (52), Expect = 4e-19 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 1303 TCAAATGGTGAAAGGTGGTGATGCACTTGGTCAGCAGTATAACACTCCACACTCT 1357 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 17 TCAAATGGTGAAAGGTGGTGATGCACTTGGTCAACAGTATAACACTCCACACTCT 71 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62963174985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5