BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54500.3
Length=2639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485852 jgi|Araly1|485852|fgenesh2_kg.5__1844__AT3G54500.1 2974 0.0
> Ahg485852 jgi|Araly1|485852|fgenesh2_kg.5__1844__AT3G54500.1
Length=2291
Score = 2974 bits (1610), Expect = 0.0
Identities = 1789/1872 (96%), Gaps = 26/1872 (1%)
Strand=Plus/Plus
Query 740 AGAGAAAACGTCTGAACTTGGGAAAGGCCCTGATATTTTTCATAGCTCTGATGAGAGTAA 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 AGAGAAAACGTCTGAACTTGGGAAAGGCCCTGATATTTTTCATAGCTCTGATGAGAGTAA 501
Query 800 AGAGCAAGGTGATTTTGATGACTACAGCTGGGCCAACATTGGTAGTTTTGATGATCTTGA 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 AGAGCAAGGTGATTTTGATGACTACAGCTGGGCCAACATTGGTAGTTTTGATGATCTTGA 561
Query 860 TCGAATGTTCAGCAATGATGTCCCTATATTTGGTGATGGCAGTCTCAGCGGTGGTGATGA 919
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 562 TCGAATGTTCAGCAATGATGTCCCTATATTTGGCGATAGCAGTCTCAGCGGTGGTGATGA 621
Query 920 GTTATGGTCATCTTCTAAAGATGTATCCAATAGCCCAAAATCATTATCATCAATGTTGGA 979
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 622 GTTATGGTCTTCTTCTAAAGATGTTTCCAATAGCCCAAAATCATTATCATCAATGTTGGA 681
Query 980 CTCTCAAGATCTAGGATTGGATATTAGAACTGAGTTTGAGCAACAAGAGAACCAGCAATT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 CTCTCAAGATCTAGGATTGGATATTAGAACTGAGTTTGAGCAACAAGAGAACCAGCAATT 741
Query 1040 TCCATTGACTGGAAAAGCCAATGGTCTGTCATCCCAAAGTGTCCCAAGTGTACGTGTAAC 1099
|||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||||||
Sbjct 742 TCCATTGACTGGAAAAGCCAATGGTCCGTCATCCCAAAGTGTGCCGAGTCTACGTGTAAC 801
Query 1100 TCTTAAGGCTGACCAATATCGTGAGCATAAGGGTCAACCCTCAGTTGAGGACCAGCCATA 1159
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 TCTAAAGGCTGACCAATATCGTGAGCATAAGGGTCAACCCTCAGTTGAGGACCAGCCATA 861
Query 1160 TCAACAAAATAAAATGATGAAGTTTTCGAAAATGCCTGGGACTTCTGAGGCAAGGCCCTT 1219
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 862 TCAACAAAATAAAATGATGAAGTTTTCGAAAATGCCTGGGACTTCTGAGGCATGGGCATT 921
Query 1220 TCAAGAGCTGTACGGTCAGAGGATTCCATTTAGTAATTCAGCTGGAAAATGTG-TAAATC 1278
||| ||||||||||||||||||||||||| ||||||||| ||||||| | || ||||||
Sbjct 922 TCATGAGCTGTACGGTCAGAGGATTCCATCTAGTAATTCTCCTGGAAAGT-TGGTAAATC 980
Query 1279 AGTTGGCACCGCCACAATCGTCTCTGATGGCTGTTAATCTCCTGAGTGAGTCTGAGGGGT 1338
||||| ||||||||| ||| |||||||||||||||||||| | |||||||||||| || |
Sbjct 981 AGTTGACACCGCCACGATCTTCTCTGATGGCTGTTAATCTGCAGAGTGAGTCTGAAGGAT 1040
Query 1339 CTGGGACATCACACTATTCACATATGCCAAACCAATACATGGCTAATTCTGCTTTTGGTA 1398
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1041 CTGGGACATCACACTATTCACATATGCCAAACCAATACATGGCTACTTCTGCTTTTGGTA 1100
Query 1399 ATCTTGCAAATCCATATTCTAGTGTGCCTGTAATTTCGGCCGTCCAACATCCTGATGTTA 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ATCTTGCAAATCCATATTCTAGTGTGCCTGTAATTTCGGCCGTCCAACATCCTGATGTTA 1160
Query 1459 GGAATCAGTTGATGCATCCTTCCTACAATCCTGCTACTGCTACCTCAGTAAACATGGCAA 1518
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1161 AGAATCAGTTGATGCATCCTTCTTACAATCCTGCTACTGCTACCTCCGTAAACATGGCAA 1220
Query 1519 CAGATGCCTCTGCACGGCCTTCAACAATGACACCACAGGAAAAACTAGAAAAACTTAGAC 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 CAGATGCCTCTGCACGGCCTTCAACAATGACACCACAGGAAAAACTAGAAAAACTTAGAC 1280
Query 1579 GCAGACAGCAAATGCAGGCAATGCTTGCCATTCAGAGACAACAGCAGCAATTTTCTCATC 1638
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1281 GCAGACAGCAAATGCAGGCAATGCTTGCCATTCAAAGACAACAGAAGCAATTTTCTCATC 1340
Query 1639 AGGTGCCTGTAGCAGATCAATCCATTACTCAAAACTGTCTCCAAGATATTCCACTCCAGC 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 AGGTGCCTGTAGCAGATCAATCCATTACTCAAAACTGTCTCCAAGATATTCCACTCCAGC 1400
Query 1699 TTGTCGACAAAACTAATCTCCAAGGGCTAACTGCAATGCCTTCCTTTGATCCTAGTTCAT 1758
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TTGTCGACAAAACTAATATCCAAGGGCTAACTGCAATGCCTTCCTTTGATCCTAGTTCAT 1460
Query 1759 CTTTGGAACAAGATGATTCTGGCAAATTTGCTGCTGCTGTTGATAATTCAGCAGAATTCG 1818
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 CTTTGGAACAAGATGATTCTGGCAAATTTGCTGCTGCTGTTGATAATTCAGCAGAATTCT 1520
Query 1819 CAGTTCTTTATCGGCTTCAGGATGTTGTAGCAAAGTTGGATATGGGAACACGGACTTGTA 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 CAGTTCTTTATCGGCTTCAGGATGTTGTAGCAAAGTTGGATATGGGAACACGGACTTGTA 1580
Query 1879 TACGGGATAGCTTATTCCGGTTGGCTGGTAGTGCAGCTCAGAGACATTACACTAGTGATA 1938
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1581 TACGGGATAGCTTATTCCGGCTGGCTGGTAGCGCAGCTCAGAGACATTACACTAGTGATA 1640
Query 1939 CATCCCACAGTAACAAGACTAGCCAGGATGACCAGGAAGTCATTCCCAGAGAAGAATCCA 1998
|| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1641 CAGCCCACAGTAACAAGACTAGCCAGGATGAGCAGGAAGTTATTCCCAGAGAAGAATCCA 1700
Query 1999 GATATAGATATGCTGGGATGCCAGATACAGAAGCAGTGACCAACCCCACAGACAGAACTG 2058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 GATATAGATATGCTGGGATGCCAGATACAGAAGCAGTGACCAACCCCACAGACAGAACTG 1760
Query 2059 TGGCTCATTTGCTCTTTCATAGGCCTTTTGATATGTTGGCGGCAAAGCGAATGGAAGGAC 2118
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1761 TGGCTCATTTGCTCTTTCATAGGCCTTTTGATATGTTGGCGGCAAAGCGTATGGAAGGAC 1820
Query 2119 CAGAATCACCCGCTTCTTCGAAGATGGGAACTGAAGAAAAAGGGAATTTTCCTAAATGCA 2178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 CAGAATCACCCGCTTCTTCGAAGATGGGAACTGAAGAAAAAGGGAATTTTCCTAAATGCA 1880
Query 2179 GCATACGAGAGACTCACTTAACTAAGCAGAAAGCTCAAAAGGAAGAAGGACCTGCAGATT 2238
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1881 TCATACGAGAGACTCACTTAAATAAGCAGAAAGCTCAAAAGGAAGAAGGACCTGCAGATT 1940
Query 2239 CACTTGCTTTGGGGAATGCACCCAACTCTGGATCTAGTAGTACTGTTGGTGAGAGGGTTG 2298
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1941 TACTTGCTTTGGGGAATGCACCCAACTCTGGATCCAGTAGTACTGTTGGTGAGAGGGTTG 2000
Query 2299 TTGAAGCATCCCAAGGAAACAAAAGAAAATTGTGAAATTTAGAAGTTTAGGTTGCCGTGT 2358
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2001 TTGAAGCATCCCAAGGAAACAAAAGAAAGTTGTGAAAATTAGAAGTTTAGGTTGCCGTGT 2060
Query 2359 TAGAGAGGAGCTTTGGGTATTTCTGCAGACTAGACAGCATCTTTCTGCGTCTCTTGAAAC 2418
||||||||||||||||| ||||| |||||||||||| ||||| |||||||| ||||||||
Sbjct 2061 TAGAGAGGAGCTTTGGGAATTTCAGCAGACTAGACAACATCTCTCTGCGTCCCTTGAAAC 2120
Query 2419 AATCTCCTGACTGCTCCTTTCTTGTGAAGCTCTTATTCTTGTAATTAGAttttttttttt 2478
|||||||| | |||||||||||||| || | | | | | || |||||||
Sbjct 2121 AATCTCCTCATTGCTCCTTTCTTGT-AA--T-T-A-----G-A-TT---TTTTTTT---- 2161
Query 2479 ttGTTACTTTTCGAAAACCTCTTTTGTTATACGTATCTCCATGACAACTACATTTTGGAA 2538
|||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2162 --GTTACTTTTCAAAAACCTCTTTTGTTACACGTACCTCCATGACAACTACATTTTGGAA 2219
Query 2539 AAC--GTGTAGTTTGCAATGTTTTTCCCC-CATTCGAAACCAGATTCAATCTCTTAATAC 2595
||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 2220 AACTCGTGTAGTTTGCAATGTTTTTTTCCTCATTCAAAACCAGATTCAATCTCTTAATAC 2279
Query 2596 AATTGTAAGCAC 2607
||||||||||||
Sbjct 2280 AATTGTAAGCAC 2291
Score = 407 bits (220), Expect = 2e-112
Identities = 372/437 (85%), Gaps = 44/437 (10%)
Strand=Plus/Plus
Query 222 AGCTGGCGATGTGTGGAGCAA-TCAGGGAGCTTGATTTTGGGTCTGTGATTCGATTTTGT 280
||||||||||||||||||||| || |||||| |||| | || ||| ||||||||||||||
Sbjct 38 AGCTGGCGATGTGTGGAGCAATTC-GGGAGCGTGATATAGGTTCTTTGATTCGATTTTGT 96
Query 281 TTCTCCAGTCATGTTTGATTGGGAAGAAGAAGAGCTTACTAATATGATATGGGGTGATGA 340
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 TTCTCAAGTCATGTTTGATTGGGAAGAAGAAGAGCTTACTAATATGATATGGGGTGATGA 156
Query 341 TGCTGAGACAGGCGACCATATTGTGCCTTTTAAAGTCAGAAGTGAACAACTTAACAAAAA 400
| ||||||||||||||||||||||||||||||| || | | |||| || ||
Sbjct 157 CGGTGAGACAGGCGACCATATTGTGCCTTTTAAA--CA-A------C---TTAATAAGAA 204
Query 401 GGAACAGATTGAGGAATCTAAGAC----A----G-CTGAGCAAAAGATAACTGGGACTAA 451
|||||||| ||| ||||||||||| | | |||||||||||||||||||||||||
Sbjct 205 GGAACAGAGTGAAGAATCTAAGACTGCTAAACTGGCTGAGCAAAAGATAACTGGGACTAA 264
Query 452 AATTGACCTCCATGATAA-AAATTTGGGGAGCAGTTCGAG-CCATAATGTTGATGAGGGG 509
|| ||||||||||||| | ||||| |||||||||||| || ||||||||||||||| |||
Sbjct 265 AACTGACCTCCATGATGATAAATT-GGGGAGCAGTTC-AGGCCATAATGTTGATGACGGG 322
Query 510 -CTTCCTCAGCCAGATTTCTGTATGAGCTCATGGCCTGACACGTCGCTAACTAATGCTAC 568
|| |||||||||||||||||||||||||||||| ||||| || | | | || |
Sbjct 323 ACT-CCTCAGCCAGATTTCTGTATGAGCTCATGGTCTGAC---TC-C-A-C-AA----A- 369
Query 569 AAAGGTTGATCAAGATTTGAGTGCGACTGAACTTTCAAAATGCTTAGCTGAGCCAGTCAG 628
| | | |||| ||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 370 A--GCT-GATCCAGATTTGAGGGCGACTCAACTTTCAAAATGCTTAGCTGAGCCAGCCAG 426
Query 629 ATATGATTCAACAAGAG 645
|||||||||||||||||
Sbjct 427 ATATGATTCAACAAGAG 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99529810185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5