BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54660.1 Length=2196 Score E Sequences producing significant alignments: (Bits) Value Ahg485870 jgi|Araly1|485870|fgenesh2_kg.5__1862__AT3G54660.1 3077 0.0 > Ahg485870 jgi|Araly1|485870|fgenesh2_kg.5__1862__AT3G54660.1 Length=2012 Score = 3077 bits (1666), Expect = 0.0 Identities = 1915/2032 (94%), Gaps = 29/2032 (1%) Strand=Plus/Plus Query 66 gaagaagaaTCGTGGAGATGGCTTCGACCCCGAAGCTTACCAGTACAATTTCATCATCTT 125 |||||||||||||||||||||||||||| ||||||||||| ||||||| || ||||||| Sbjct 1 GAAGAAGAATCGTGGAGATGGCTTCGACTCCGAAGCTTACTAGTACAA-TT--TCATCTT 57 Query 126 CTCCATCTCTTCAATTCCTCTGCAAAAAACTCCCAATCGCAATTCATCTACCATCATCTT 185 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 58 CTCCATCTCTTCAAATCCTCTGCAAAAAGCTCCCAATCGCAATTCATCTACCATCATCTT 117 Query 186 CTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTATTCTCTCCGTCCCC 245 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 118 CTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTGTTCTCTGCGTCCCC 177 Query 246 GTATCGCCCTACTCTCAAACCACCGCTATTACCACTCTCGCCGGTTTTCTGTTTGTGCCA 305 |||||||| |||||||||||||||| |||||||||||||| |||||||||||| |||||| Sbjct 178 GTATCGCCGTACTCTCAAACCACCGGTATTACCACTCTCGTCGGTTTTCTGTTCGTGCCA 237 Query 306 GTACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACTATCGGTG 365 |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 238 GTACCGATAACGGAGCTGACTCAGAGCGCCACTACGATTTTGATCTCTTCACTATCGGTG 297 Query 366 CCGGAAGCGGCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCG 425 |||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||| Sbjct 298 CCGGAAGCGGCGGCGTCCGCGCTTCTCGCATCTCAACTAGCTTCGGTGCATCCGCCGCCG 357 Query 426 TTTGCGAGCTTCCTTTTTCCACTATCTCTTCCGATACTGCTGGAGGCGTTGGAGGAACGT 485 |||||||||||||||||||||| ||||| || ||||| ||||||||||| |||||||||| Sbjct 358 TTTGCGAGCTTCCTTTTTCCACCATCTCCTCTGATACAGCTGGAGGCGTCGGAGGAACGT 417 Query 486 GTGTATTGAGAGGATGTGTACCAAAGAAGTTACTTGTGTATGCATCCAAATACAGTCATG 545 ||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | Sbjct 418 GTGTACTGAGAGGATGTGTTCCAAAGAAGTTGCTTGTGTATGCGTCCAAATACAGTCACG 477 Query 546 AGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGA 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 AGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGA 537 Query 606 CTACTTTGATTGCTAACAAGAATGCTGAGTTACAGCGGTTGACTGGTATTTATAAGAATA 665 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 538 CTACTTTAATTGCTAACAAGAATGCTGAGTTGCAGCGGTTGACTGGTATTTATAAGAATA 597 Query 666 TACTGAGCAAAGCTAATGTCAAGTTGATTGAAGGTCGTGGAAAGGTTATAGACCCACACA 725 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 598 TACTTAGCAAAGCTAATGTCAAGTTAATTGAAGGTCGTGGAAAGGTTATAGACCCACACA 657 Query 726 CTGTTGATGTAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGAC 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CTGTTGATGTAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGAC 717 Query 786 GTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGATGCCGCGCTTG 845 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 718 GTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGATGCCGCTCTTG 777 Query 846 ATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATAGCCCTGGAGT 905 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 778 ATTTGCCTTCCAAGCCCAAGAAAATTGCAATTGTTGGTGGTGGCTACATAGCCCTGGAGT 837 Query 906 TTGCGGGGATCTTCAATGGTCTTAACTGTGAAGTTCATGTATTTATAAGGCAAAAGAAGG 965 ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 838 TTGCGGGCATCTTTAATGGTCTTAACAGTGAAGTTCATGTATTTATAAGGCAAAAGAAAG 897 Query 966 TGCTGAGGGGATTTGATGAAGATGTCAGGGATTTCGTTGGAGAGCAGATGTCTTTAAGAG 1025 | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 898 TTCTGAGGGGATTTGATGAAGACGTCAGGGATTTTGTTGGAGAGCAGATGTCTTTAAGGG 957 Query 1026 GTATTGAGTTTCACACTGAAGAATCCCCTGAAGCCATCATCAAAGCTGGAGATGGCTCGT 1085 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 958 GTATTGAGTTTCACACTGAAGAATCCCCTGAAGCCATCATCAAAGCTGGAGATGGATTAT 1017 Query 1086 TCTCTCTGAAGACCAGCAAGGGAACTGTTGAGGGATTTTCGCATGTTATGTTTGCAACTG 1145 | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1018 TGTCTCTGAAGACCAGCAAGGGAACCGTTGAGGGCTTTTCGCATGTTATGTTTGCAACTG 1077 Query 1146 GTCGCAAGCCCAACACAAAGAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAA 1205 |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1078 GTCGCAAGCCAAACACAAAGAATTTAGGGTTGGAGAATGTTGGCGTAAAAATGGCGAAAA 1137 Query 1206 ATGGAGCAATAGAGGTTGACGAATATTCACAGACATCTGTTCCATCCATCTGGGCTGTTG 1265 |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 1138 ATGGAGCAATAGAGGTTGACGAGTATTCACAGACCTCTGTTCCATCCATTTGGGCTGTTG 1197 Query 1266 GGGATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGG 1325 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 GGGATGTCACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGG 1257 Query 1326 CTAAAACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGAGCTGTTCCCTGCGCCG 1385 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 CTAAGACTTTGTTTCAAAATGAGCCAACAAAGCCTGATTATAGAGCTGTTCCCTGCGCCG 1317 Query 1386 TTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGGCCATAGAACAAT 1445 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1318 TTTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGGCTATAGAACAAT 1377 Query 1446 ATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCATTAAAGGCTACCCTTTCAGGAC 1505 |||||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||| Sbjct 1378 ATGGTGATGTCGATGTTTTCACATCAAACTTTAGGCCATTAAAGGCTACGCTTTCAGGAC 1437 Query 1506 TTCCAGACCGAGTATTTATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTG 1565 |||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 TTCCAGACCGGGTGTTCATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTG 1497 Query 1566 TTCACATGTGTGGAGAAGATTCACCAGAAATCATCCAGGGATTTGGGGTTGCAGTTAAAG 1625 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 TTCACATGTGTGGAGAGGATTCACCAGAAATCATCCAGGGATTTGGGGTTGCAGTTAAAG 1557 Query 1626 CTGGTTTAACTAAGGCCGACTTTGATGCTACAGTGGGTGTTCACCCCACAGCAGCTGAGG 1685 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1558 CTGGTTTAACTAAGGCCGACTTTGATGCAACAGTGGGTGTTCACCCCACAGCGGCTGAGG 1617 Query 1686 AGTTTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGGGAAAGG 1745 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1618 AGTTTGTCACTATGAGGACTCCAACCAGGAAAATCCGCAAAGACTCCTCTGAGGGAAAGG 1677 Query 1746 CAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGCAAAAAAGATTGTATT 1805 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1678 CAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGCAAAAAAGGTTGTATT 1737 Query 1806 TACGGCATTGGAGCCCCCTGATAAGGAGAACATTGTGTCTGTGAAGAAGAAG--CTTTTC 1863 |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1738 TACGGCATTGGAGCTCCCTGACAAGGAGAACATTGTGTCTGTGAAGAAGAAGAACTTTTT 1797 Query 1864 TTTT----GGCAGAGAATATTTTTTCATAATGTCGTGTGAAGATATGATCGCTGTCCTGC 1919 |||| ||||||||||| ||||| ||||||||| ||| ||||||||| || | ||||| Sbjct 1798 TTTTTTCTGGCAGAGAATAATTTTTGATAATGTCGCGTGGAGATATGATGGCCGACCTGC 1857 Query 1920 AATACTTTTGATCGTTTGAC--ACACGACCAAATTCCTCGAGAGAGAGAGGTTGTAACTA 1977 |||||||||||||| ||||| || ||||||||||||||||||||| | Sbjct 1858 AATACTTTTGATCGGTTGACCTACGCGACCAAATTCCTCGAGAGAG-----------C-- 1904 Query 1978 TTCCGAAAGAGCTCTAAAA-CTGAAGCTTTCAGTTCTTGTGACATCATAATGAAGGCTGT 2036 ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| Sbjct 1905 ----GAAAGAGCTCTAAAAACTGAAGCTTTCAGTTCTTGTGACATCGTAAAGAAGGCTGT 1960 Query 2037 ATAGATATAACAGTTTCGAGTTTTATTTGGATTTGTAGTATTTTTGTTTTCT 2088 ||||||| |||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1961 ATAGATAAAACAGTTTCGAGTTTTCTTTGGATTTGTAGTTTTTTTCTTTTCT 2012 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82655831650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5