BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54720.1
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485877 jgi|Araly1|485877|fgenesh2_kg.5__1869__AT3G54720.1 3535 0.0
> Ahg485877 jgi|Araly1|485877|fgenesh2_kg.5__1869__AT3G54720.1
Length=2253
Score = 3535 bits (1914), Expect = 0.0
Identities = 2147/2260 (95%), Gaps = 13/2260 (1%)
Strand=Plus/Plus
Query 15 ctctctctctctctctGCAATGTCACAACCTCTCACCACCAGACCCACCGTTACCGGAAT 74
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 1 CTCTCTCTCTCTCTCTCCAATGTCACAGCCTCTCACCACCAGACCCACCGTCGCCGGAGT 60
Query 75 ATCTATAATCCCTTTCCGACAACCGCCGCCTCTCTGTTCTTTCCTCTTCGTCATCGTTCT 134
|||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 61 CTCTATATTCCCTTTCCGACAACCGCCGCCGCTCTGTGCTTTCCTATTCGTCATCGTTCT 120
Query 135 TTTCGTCGCCACTTTCTACACTCTCCATCATCCAGACGCCGTTACTCCTCCTCTTCTATT 194
||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 121 TTTCGTCGCTACTTTCTACACTCTCCATCACCCAGACGCCGTTACTCCTTCTCTTCTGTT 180
Query 195 TTCTCGAAATGCCTATAATGCCCTTCGTCTCCGCCGCCTCTTCCTCTCCTCTGCTTCTAA 254
|||||||||| || |||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 181 TTCTCGAAATTCCCATAATGCCCTCCGTCTCCACCGCCTCTTCCTCTCCTCTGCTTCCAA 240
Query 255 CGCCACCATCTCCTCTTACCTCCGTGAATTGACCCGTCATCCTCACCTCGCCGGAACTAA 314
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 CGCCACCATCTCCTCTTACCTCCGAGAATTGACCCGTCATCCTCACCTCGCCGGAACTAA 300
Query 315 ACCCTCTTTAGACACACT-TC-ACTACGTCTTTAA-CCATTTCCAAAGCCTCGGACTTGA 371
|||||||||||| | ||| || |||||||| || ||||||| ||||||||||||||||
Sbjct 301 ACCCTCTTTAGA-A-ACTCTCAACTACGTC-CAAAGCCATTTCAAAAGCCTCGGACTTGA 357
Query 372 GACCCATGTCGCCGAATACGAAGCTCTCTTATCTTATCCTACGCACATCTCCGTCACGGC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GACCCATGTCGCCGAATACGAAGCTCTCTTATCTTATCCTACGCACATCTCCGTCACGGC 417
Query 432 AAGTTTTAGCAACACGACGACTCTTGAGTTTGACTTAAACGACGTTCCCGGAGACTCTCC 491
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 GCGTTTTAGCAACACGACGACTCTTGAGTTTGACTTAAACGACGTTCCCGGAGATTCTCC 477
Query 492 GGTCGTTAGGCCTTACCACGCTTATTCTCCATCTGGGTCGGCGCAAGGTAACGTGGTTTT 551
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 478 GGTCGTTAGGCCTTACCACGCTTACTCTCCATCTGGGTCGGCGCAAGGTAGCGTGGTTTT 537
Query 552 CGTGAATCACGGCGAGGAGAGAGACTATCATGCGCTTGAGTCTATTGGTGTGAGCGTTAA 611
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 TGTGAATCACGGCGAGGAGAGAGACTATCATGCGCTTGAGTCGATTGGTGTGAGCGTTAA 597
Query 612 AGGGTGTGTGGTTTTAGCGAGGAAAGGTGAAAACTTGGGAAGAGGAGCAATTGTGAAAAT 671
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||
Sbjct 598 AGGGTGTGTGGTTTTAGCGAGGAAAGGTGAAACCTTGGGAAGAGGAGGAATTGTTAAGAT 657
Query 672 AGCAGAAGCTAAAGGTGCGCTGGGAGTGCTAATATACGCCGAGAATGACGGTGGTGGATT 731
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 AGCAGAAACTAAAGGTGCGCTGGGAGTGCTAATATACGCCGAGAATGACGGTGGCGGATT 717
Query 732 TGGCGGGATTGAGAGAGGTACGGTTATGAGAGGAATCGGAGATCCGGTTAGCCCGGGTTG 791
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 TGGCGGGATTGAAAGAGGTACGGTTATGAGAGGAATCGGAGATCCGGTTAGTCCGGGTTG 777
Query 792 GCCCGGAGTTGTCGGAGGAGAAAAACTGAGCTTGGATGACGAATTGGTCACTCGGAGATT 851
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 778 GCCCGGAGTCGTCGGAGGAGAAAAACTGAGCTTGGAAGATGAATTGGTCACTCGGAGATT 837
Query 852 TCCCAAAATCCCATCTTTGCCTTTGTCTCTTCGTAATGCTGAGATCATTTTGGCTTCTCT 911
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CCCCAAGATTCCATCTTTGCCTTTGTCTCTTCGTAATGCTGAGATCATTTTGGCTTCTCT 897
Query 912 GGGCGGTGCTAGAGCTCCGTTGGAGTGGCGGAATTCGGGTCGTGTCGGACCGGGTCAACG 971
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 898 TGGCGGTGCTAGAGCTCCGTTGGAGTGGCGGAATTCGGGTCGGGTCGGATCGGGTCAACG 957
Query 972 GGTTGGCCCTGGACGGATGGTTATTAACATGACGTTTCAGGGGGAGATGAAAATGAAGAA 1031
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGTTGGCCCTGGACGGACGGTTATTAACATGACGTTTCAGGGGGAGATGAAAATGAAGAA 1017
Query 1032 AATTAACAATGTTGTGGTTACAATAAGAGGGAGTGAAGAAGCGGATAGGTATGTGATACT 1091
|||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||
Sbjct 1018 AATTCACAATGTTGTGGTTACCATAAGAGGAAGTGAAGAAGCGGATCGGTATGTGATTCT 1077
Query 1092 TGGGAACCATAGAGATGCATGGACATATGGAGCTGTTGATCCAAACAGTGGAACTTCTGC 1151
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGGGAACCATAGAGACGCATGGACATATGGAGCTGTTGATCCAAACAGTGGAACTTCTGC 1137
Query 1152 TTTACTTGACATTAGTCGACGATTTGCTCTTTTGCTTAAATCTGGTTGGAGACCACGTAG 1211
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1138 ATTACTTGACATTAGCCGACGATTCGCTCTGTTGCTTAAATCTGGTTGGAGACCACGTAG 1197
Query 1212 GACCATTCTCCTTTGTAGTTGGGATGCAGAAGAATTTGGAATGATTGGATCAACTGAATG 1271
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1198 GACCATTCTCCTTTGTAGTTGGGATGCAGAAGAATTCGGAATGATTGGATCAACTGAATG 1257
Query 1272 GATTGAAGAAAATGTTCTTAACTTAGGTGCAAGTGCTGTTGCTTATCTTAATGTAGATTG 1331
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1258 GGTTGAAGAAAATGTTCTTAACTTAGGTGCAAGTGCTGTGGCTTATCTTAATGTAGATTG 1317
Query 1332 TGCAGTCCAAGGCTCTGGtttttttGCTGGTGCAACTCCTCAATTAGACGGTCTTCTTGT 1391
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TGCGGTCCAAGGCTCTGGTTTTTTTGCTGGTGCAACTCCTCAATTAGACGGTCTTCTTGT 1377
Query 1392 CGATGTCTTGAAGCTGGTACAGGATCCTGATGCAGTAGGCTTGACAGTGGAAGAGACATT 1451
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1378 AGATGTCTTAAAGCTGGTTCAGGATCCTGATGCAGTAGGCTTGACAGTGGAAGAGAC-TT 1436
Query 1452 T-AAGTCTCAAAATAACATTATTCAGAGGCTAAGTAGAGTAGATTCTGATTTTTCCGGTT 1510
| |||||||| || |||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 1437 TCAAGTCTCAGAACAACATTATACAGAGGCTAAGTAGAGTTGATTCTGATTTTTCCAGTT 1496
Query 1511 TTCTTCATCATGCCGGGATACCGTCTATAGACATGTACTATGGAGCAGATTATCCTGTCT 1570
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTCTTCACCATGCCGGGATACCGTCTATAGACATGTACTATGGAGCAGATTATCCTGTCT 1556
Query 1571 ATCACACTGCATTTGACTCCTATGATTGGATGATCCACAACGCAGATCCATTGTTTCACC 1630
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1557 ATCACACCGCATTTGACTCCTATGATTGGATGATCCACAATGCCGATCCATTGTTTCACC 1616
Query 1631 GTCATGTTGCTATGGCTGGAATTTGGGGACTTTTAGGAATTCTCTTGGCTGATGAGCCAC 1690
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1617 GCCATGTTGCTATGGCTGGAATTTGGGGACTTTTAGGAATTATCTTGGCTGATGAGCCAC 1676
Query 1691 TCATACCATTCGATTACATCTCTTATGCAGACCAATTGCAGGCACATAGAGATAAACTGA 1750
| ||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1677 TGATACCATTCGATTACATCTCTTATGCAGAACAATTGCAGGTACATAGAGATACTCTGA 1736
Query 1751 GCAAGCTCTTAGAAGGGAAAGTCTCTGTAAATCCCTTAAGCATGGCGATACAAGAGTTCT 1810
||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||
Sbjct 1737 GCAAGCTCTTAGAAGGGAAAGCCTCTGTTAATCCCTTGAGCATGGCGATACAAGAGTTCT 1796
Query 1811 CTTTGGTTGCCAAAGAAGCCGCAGATGAAGCAAAGAAGTTAAAGGGA-AAATCATATAGC 1869
|||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 1797 CTTTGGTTGCAAAAGAAGCCGCAGATGAAGCAAAGAAATTAAA-GGAGAAATCATATAGC 1855
Query 1870 AAAAATGATGTAGCAGCAGCGGCGAAGAGAAGAGAGCTAAATGACAGGTTGATGCTTGTA 1929
||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1856 AAAGATGATGTTGCAGCAGCTGCGAAGAGAAGAGAGCTAAATGACAGGTTGATGCTTGTA 1915
Query 1930 GAAAGAGGGTTTTTGGATGCAGAAGGGATCAAAGGGAAGGAATGGTTCAAGCATCTTGTG 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GAAAGAGGGTTTTTGGATGCAGAAGGGATCAAAGGGAAGGAATGGTTCAAGCATCTTGTG 1975
Query 1990 TATGGACCGGCGGCTGAGCCAGAGAGCAAGCTAGGATTCTTCCCGGGAATAGCAGATGCC 2049
|||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1976 TATGGACCAGCGGCTGAACCAGAGAGCAAGCTGGGATTTTTCCCGGGAATAGCAGATGCG 2035
Query 2050 ATTGCGATGAACGCATCAGAGGGAATAATTGAGCACGAGATATGGAGAGTCGCAAGAGCG 2109
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2036 ATTGCGATAAACGCATCAGAGGGAGTAATTGAGCACGAGATATGGAGAGTCGCAAGAGCG 2095
Query 2110 ATTCAGAGAGCAAGCAAAGCTCTTAAAGGAGGTTTCACATGAGAAAATCTGAAAGAGTTC 2169
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2096 ATTCAGAGAGCAAGCAAAGCTCTTAAAGGAGGGTTCACATGAGAAAATCTCAAAGAGTTC 2155
Query 2170 TCTTTTGTGTATATATTGTGACTATAGATTGTAGAAGAATAACGTCTTATGAACTAATTT 2229
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 2156 TCTTTTGTGTATATATTGTGACTGTAGATTGTAGAAGAATAACGTATTATGAACTAATTT 2215
Query 2230 TCATAACCATTTATGAAAC-AAACACTATAATCTAATCAT 2268
|||||||||||||||| | ||||||||||||||||||||
Sbjct 2216 -CATAACCATTTATGAA-CTAAACACTATAATCTAATCAT 2253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85779231740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5