BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G54760.1
Length=2908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg348567 jgi|Araly1|348567|fgenesh1_pg.C_scaffold_5001959 2639 0.0
> Ahg348567 jgi|Araly1|348567|fgenesh1_pg.C_scaffold_5001959
Length=2511
Score = 2639 bits (1429), Expect = 0.0
Identities = 1893/2109 (90%), Gaps = 63/2109 (3%)
Strand=Plus/Plus
Query 457 ACTGAGATTGAGTGTGAAGGAGATACTGGAACTGTTGAGGTGAAGTTGAATGATGAAACG 516
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ACTGAGATGGAGTGTGAAGGAGATACTGGAACTGTTGAGGTGAAGTTGAATGATGAAACG 363
Query 517 GCTAAGTCTGAAGTTAAGAGTAA-AAGTGGTGCTA--C-TCATGAAACTGCAGGAGAAGA 572
||||||||||||||||||||||| || |||||||| | | |||||||||||||||||||
Sbjct 364 GCTAAGTCTGAAGTTAAGAGTAACAA-TGGTGCTAGTCATGATGAAACTGCAGGAGAAGA 422
Query 573 GGAGACTGAAAATTCTGTTGCGAATGAAGCTACTGATGAGAAGGCAACATGTGAAGTTGA 632
||||||| || ||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 423 AGAGACTGTAATTTCTGCTGCAAATGAAGCTACTGATGAGAAGGCAAAATGTGAAGTTGA 482
Query 633 AGATAACGGTGGTGTTTGTGATGCAGAACAAGATGTTGAAACTGAAAATTTCCAGCTAAA 692
|||||||||||||| ||||||||| |||||| ||||||||| |||||| | ||||| |||
Sbjct 483 AGATAACGGTGGTGCTTGTGATGCTGAACAAAATGTTGAAAGTGAAAAGTCCCAGCAAAA 542
Query 693 TCCAGTCCATGGTGAGACGCTTTCTGTTGCAGAAGATAAAGCTGACCAAGAGAAGGAGAC 752
| || |||||| |||||||||||||||| ||||| |||||| ||||| ||||||||| ||
Sbjct 543 TACACTCCATGTTGAGACGCTTTCTGTTACAGAAAATAAAGTTGACCGAGAGAAGGAAAC 602
Query 753 AACAAAGAAAATCGAGAAGGATATTAACGAAATGGAAGTTGATAGCAAACAGGAAGATGA 812
||||||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||
Sbjct 603 AACAAAGAAAAGAGAGAAGGATAATAACGAAATGGATGTTGATAGCAAACAGGAAAATGA 662
Query 813 AGAGAA---TG------A-G-AC--------C--GAAGATGCTAAGCATTCAGAATCTGC 851
|||||| || | | || | ||| ||||||||||||||| ||||||
Sbjct 663 AGAGAATGTTGCTCTTCATGAACAGGGAAATCATGAACATGCTAAGCATTCAGGATCTGC 722
Query 852 ACAGGTTCCAGAGGAGTCTACCAAATTGAGCAAAGAGGAAACAGACGAAGAAAATCAGAA 911
|||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||
Sbjct 723 ACAGGTTCCAGAGGAGTCTACCCAACTGAGCAAAGAGGAAACAGATGAAAAAAATCAGAA 782
Query 912 AGAGGAAAACGGAGTTGCCATGGAAATTGATGGTGTGGCAGGGGAACATGTGGA-AAAGG 970
|||||||||||||| ||||||||||||||| ||| ||||| |||||| || || |||||
Sbjct 783 AGAGGAAAACGGAGAAGCCATGGAAATTGATTGTGCGGCAGAGGAACAGGT-GATAAAGG 841
Query 971 TTGTTAAAGTAGGCAGTGGTTCGGATAATG-CTTGCAATGAATCTGCTGGTGCAAGTATG 1029
|| |||||||||| | | || |||||||| | |||||||||||||||||||||||||||
Sbjct 842 ATGCTAAAGTAGGCGGCGCTTTGGATAATGAC-TGCAATGAATCTGCTGGTGCAAGTATG 900
Query 1030 GTTCAAACACAAGATGTTCCAATAGCTGAAGCTGACAACAATGAATCCAATGTAGTAAAG 1089
|| |||| |||||| ||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 901 GTAAAAACCCAAGATATTCCAGTAGCTGAAGCTGACAACAATGTTTCCAATGTAGTTGAG 960
Query 1090 AAAATGGAAATTGATGAACGCAAAGATAATGCTGATATGACAAGTGATCTTACGGGAACA 1149
|||||||||| |||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 961 AAAATGGAAACTGATGAACGCAAAGATAATGCTCATATGGCAAGTGATCTTACCGGAACA 1020
Query 1150 ATTGAATCTGCTGATTCAGCAATCCCAAATAGTCCCACTGAAGATGCTGCTCCAGGTGAA 1209
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1021 ATTGAATCTGCTGATTCAGCTATCTCAAATAGTCCCACTGAAGATGCTGCTCCAGGTGAA 1080
Query 1210 GTTGAACCGTTGGATCATAATGCTCTTTTTGATCCAACTTCTGATATTACCAACTTTATT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTTGAACCGTTGGATCATAATGCTCTTTTTGATCCAACTTCTGATATTACCAACTTTATT 1140
Query 1270 GATTTCAGTGGTGTATCATCTTGGTCAGGAAATATACAAGACCTTAAAACCGAAACCGGG 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GATTTCAGTGGTGTATCATCTTGGTCAGGAAATATACAAGACCTTAAAACCGAAACCGGG 1200
Query 1330 AATGTATCTTTGAAAGAGGATAAGAAAGTTACTGACATGGCAGAGGACGTTGTCACAGCA 1389
||||||||||||||||| |||||||||| ||||||| |||||||||| |||| |||||||
Sbjct 1201 AATGTATCTTTGAAAGATGATAAGAAAGCTACTGACCTGGCAGAGGATGTTGCCACAGCA 1260
Query 1390 GAT---A-T--A-GA--AA--C-------T---GAATC-GAAT-GAA-GC--C-CGTGTT 1422
||| | | | | || | | ||||| |||| ||| | | ||||||
Sbjct 1261 GATGCTAATCTAAGCTTAAGTCCCGAAGGTATCGAATCTGAATTGAATGAAGCGCGTGTT 1320
Query 1423 GGTGTTGGGGCAGAATCTCCAGCTGCTGCAACTGATTGTTCAAAAGAGACTTCTGATGCA 1482
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1321 GGTGTTGGGGCAGAATCTCCAGCTGCTGCAACAGATTGTTCAAAAGAGACTTCTGATGCA 1380
Query 1483 ACTTTGGGATCTGAAGAAAACCAACAAGATAAGGATCATCAATGCCTCGACAAGAAAACA 1542
|||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||| |
Sbjct 1381 ACTTTGGGATCTGAAGAAAACCAACAAGATAAAGATCATCAATCCCTGGATAAGAAAATA 1440
Query 1543 GCAGATGTACAAGATACAATGATAGAGGAAGATGACATTACTCATGAAGCTCCAAGTTTC 1602
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1441 GCAGATCAACAAGATACAATGATAGAGGAAGATGACATTACTCATGAAGCTCCAAGTATC 1500
Query 1603 GACCCAAACCAAAAGGAAAATGCAGAAATGGAAGAAAATCACAACAATTTTGTTTATGCT 1662
|| ||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||
Sbjct 1501 GATCCAAACCAAAAGGAAGATGCAGAAATGGAAGAAAATCCCAACAATTCTGATTATGCT 1560
Query 1663 GATGATG-AAGCTGGTTCTGATGTTAAGACCAATGGTGTGAAACGAAAGGCTGATGTCCT 1721
||||| || | |||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1561 AATGATATAACC-GGTTTTGACATTAAAACCAATGGTGTGAAACGAAAGGCTGATGTCCT 1619
Query 1722 GAGTGAGGATTCACCAGGAGAAGGTAGGAAGACTGTTTCATTCGCCAAGGTGTCTTTTGC 1781
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1620 GAGTGAGGATTCACCAGGAGAAGGTAGGAAGACTGTTTCATTCGCGAAGGTGTCTTTCGC 1679
Query 1782 CGAAAGGCCGTCCTTTAAAATTGGTGCATGCATAGCCAGGGCTGCAAGTCAGATGGCAGG 1841
|||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1680 CGAAAGGCCGTCCTTTAAGATCGGTGCATGCATAGCCAGAGCTGCTAGTCAGATGGCAGG 1739
Query 1842 ATCTCCTTCAGTTTTGAAGGGTAGTAACTTTGGTGATGAAACTCTTTCTGTTGAGAGTTT 1901
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATCTTCTTCAGTTTTGAAGGGTAGTAACTTTGGTGATGAAACTCTTTCTGTTGAGAGTTT 1799
Query 1902 TGTATCCCAGCTTCATTGCGCAGCCACAGACCCTGTTAAAGAGAACGTTGTATCTGACAT 1961
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1800 TGTATCCCAGCTTCACTGTGCAGCAACAGACCCTGTTAAAGAGAACGTTGTATCTGACAT 1859
Query 1962 TGCTACTGGCTTTTTCTTGGATTTCCGAAACTCATCAGCATCGCAGCAAGTTACCACGGA 2021
|||| ||||||||||||| ||||||||||||||||| || || |||||||||||||||||
Sbjct 1860 TGCTGCTGGCTTTTTCTTAGATTTCCGAAACTCATCGGCTTCACAGCAAGTTACCACGGA 1919
Query 2022 AAAGGTAAGCAAGAAAAGAGGTAGACCATCCAATTCTAATGTAGCAGGAACTGAAGCATT 2081
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 1920 AAAGGTAAGCAAGAAAAGAGGTCGACCATCCAATTCTGATGTAGCAGGAACTGAATCATT 1979
Query 2082 TGAGTTTGAGGAAATGGGCGACACATACTGGACTGACAGAGTGATCCATAATGGTGGTGA 2141
|||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1980 TGAGTTCGAGGAAACGGGCGACACATACTGGACTGACAGGGTGATCCATAATGGTGGTGA 2039
Query 2142 AGGGCAAACACCGGCTACTGA-AAAGGGAAATTATCAAGTCGTGCCGGTTGAGTTGAAAC 2200
|| |||||| || ||||||| ||||| |||||||||||| ||||| |||||||||||||
Sbjct 2040 AGAGCAAACTCCACCTACTGAGAAAGG-AAATTATCAAGTTGTGCCAGTTGAGTTGAAAC 2098
Query 2201 CTGCTCAGGTTCAAAGGACTCGGCGACCATACAGAAGACGACAGTCTCAGATCAGTATTC 2260
|||||| | ||||||||||||| ||||||||||||||||||||| ||||||||| |||||
Sbjct 2099 CTGCTCTGATTCAAAGGACTCGTCGACCATACAGAAGACGACAGGCTCAGATCAATATTC 2158
Query 2261 CTCATTCAGCCACTA-AGAAACCGGCAGACATTGATGAGAATGCACCAGCTGAGATTATA 2319
|| ||||||| | | | ||||| ||| || ||||||||||||||||||||||| || ||
Sbjct 2159 ATCTTTCAGCCTC-AGACAAACCAGCAAACTTTGATGAGAATGCACCAGCTGAGCTTGTA 2217
Query 2320 ATGAACTTTTTTGAAACTGATACAATACCTCCTGAGAAGAGTCTGAGTAAAATGTTCAGA 2379
|||||||||| |||| | ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2218 ATGAACTTTTCTGAAGCGGATACAATACCTCCTGAGAAGAGCCTGAGTAAAATGTTTAGG 2277
Query 2380 CATTTTGGCCCTATACAGGAGTTGCGGACTGAAGTTGACAGGGAGAAAAACCGGGCTAGG 2439
|||||||| || ||| |||||| | |||||||||||||| |||||| |||||||||||
Sbjct 2278 CATTTTGGACCAATAAAGGAGTCACAGACTGAAGTTGACAAGGAGAATAACCGGGCTAGA 2337
Query 2440 GTAGTTTTTAGGAAGGGTGCTGATGCGGAGGTTGCTTACAATAGCGCAGGAAGGTTCAAC 2499
||||||| || ||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 2338 GTAGTTTATAAGAAGGGTGCTGATGCTGAGGTTGCTTACAACAGTGCAGGAAGGTTCAGT 2397
Query 2500 ATATTTGGG 2508
|| ||||||
Sbjct 2398 ATTTTTGGG 2406
Score = 143 bits (77), Expect = 8e-33
Identities = 104/117 (89%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 241 ATGGAGGAACCGAGAGAGGAAAGTGAGGCTGTTCGTGATTGCAGTGAGCCCATGGAGGAA 300
|||||||||| |||||||||||||||| | || |||||| || ||||||||| |||||
Sbjct 1 ATGGAGGAACAGAGAGAGGAAAGTGAGTTTCTTGGTGATTTTAGAGAGCCCATGAAGGAA 60
Query 301 GCTGGTAAGGGATC-AGGTTTATCTTCTAAAACTGAAACCCTAGTTGATGAGGATGC 356
| |||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTTGGTAAGGGA-CTAGGTTTATCTTCTAAAACTGAAACCCTAGTTGGTGAGGATGC 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109776086090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5