BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G54890.1 Length=1109 Score E Sequences producing significant alignments: (Bits) Value Ahg485905 jgi|Araly1|485905|fgenesh2_kg.5__1897__AT3G54890.1 1591 0.0 Ahg936994 jgi|Araly1|936994|scaffold_501185.1 167 2e-40 > Ahg485905 jgi|Araly1|485905|fgenesh2_kg.5__1897__AT3G54890.1 Length=1022 Score = 1591 bits (861), Expect = 0.0 Identities = 991/1049 (94%), Gaps = 28/1049 (3%) Strand=Plus/Plus Query 1 ACACGTGGCCCAATGAAAAAGCCACGCAGGCTCTGTATAGCCAATTGCAATCTGGTTTTA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ACACGTGGCCCAATGAAAAAGCCACGCAGGCTCTGTATAGCCAATTGCAATCTGATTTTA 60 Query 61 GATTCTCATCTCACAAATCTTACTTATACGATCAGTCTCCCACATTCACACTTCCACCAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 GATTCTCATCTCACAAATCTTACTTATACGATCAGTCTCCCACATTCACACTTCCACC-A 119 Query 121 ACACCTCTCGTCCACATCTTTCTCCTTTGGTGGCAAACACAACGACAGATAGAGAGAAAC 180 | | ||| | ||| | || | ||||||||||||||||||||||| Sbjct 120 A-A---------CAC--C--TCT-C----GT--C---CACAACGACAGATAGAGAGAAAC 155 Query 181 GATGGCGTCGAACTCGCTTATGAGCTGTGGCATAGCCGCCGTGTACCCTTCGCTTCTCTC 240 ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct 156 GATGGCGTCGAACTCGCTTATGAGCTGCGGCATCGCCGCCGTTTACCCTTCGCTTCTCTC 215 Query 241 TTCTTCCAAGTCTAAATTCGTATCCGCCGGAGTTCCACTCCCAAACGCCGGGAATGTTGG 300 ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 216 TTCTTCCAAGTCTAAATTCGTTTCCGCCGGAGTTCCTCTCCCTAACGCCGGGAATGTTGG 275 Query 301 TCGTATCAGAATGGCTGCTCACTGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGG 360 ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 276 CCGTATCAGAATGGCTGCTCACTGGATGCCCGGGGAGCCACGACCAGCTTACCTCGACGG 335 Query 361 TTCTGCTCCTGGTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCT 420 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 336 TTCTGCTCCTGGTGACTTTGGATTTGACCCACTTGGACTTGGAGAAGTTCCAGAGAACCT 395 Query 421 TGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCTGTTCCTGG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 396 TGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCTGTTCCTGG 455 Query 481 GATTTTGGTACCAGAAGCATTAGGATATGGAAACTGGGTTAAGGCTCAGGAATGGGCAGC 540 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 456 GATTTTGGTACCAGAAGCATTAGGATATGGAAACTGGGTGAAGGCTCAGGAATGGGCAGC 515 Query 541 ACTACCAGGGGGTCAAGCCACTTACTTGGGAAACCCAGTCCCGTGGGGTACTTTGCCCAC 600 | |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 516 AGTACCAGGGGGTCAAGCAACTTACTTGGGGAACCCGGTCCCGTGGGGTACTTTGCCCAC 575 Query 601 AATCTTGGCCATTGAGTTCTTAGCCATTGCATTTGTTGAGCACCAGAGAAGTATGGAGAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 AATCTTGGCCATTGAGTTCTTAGCCATTGCATTTGTTGAGCACCAGAGAAGTATGGAGAA 635 Query 661 AGACCCTGAGAAGAAGAAGTACCCGGGAGGCGCATTTGACCCTCTTGGATACTCGAAGGA 720 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 636 AGACCCCGAGAAGAAGAAGTACCCTGGAGGCGCATTTGACCCTCTTGGATACTCAAAGGA 695 Query 721 CCCCAAGAAGCTCGAGGAATTGAAAGTTAAAGAGATCAAGAACGGGCGGCTTGCGCTGTT 780 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 696 CCCCAAGAAGCTTGAGGAATTGAAAGTTAAGGAGATCAAGAACGGGCGGCTTGCACTGTT 755 Query 781 GGCGTTTGTAGGATTCTGTGTGCAACAGTCGGCTTACCCGGGGACAGGACCATTGGAGAA 840 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 756 GGCGTTTGTAGGATTCTGTGTTCAACAGTCGGCTTACCCGGGGACAGGACCATTGGAGAA 815 Query 841 CTTGGCAACTCACTTGGCGGATCCATGGCACAACAACATTGGCGATATTGTTATCCCTTT 900 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 816 CCTGGCAACTCACTTGGCGGATCCATGGCACAACAACATTGGCGATATTGTTATCCCTTT 875 Query 901 CAACTAATGAATGTAAAAATAGAAATATGTGTACCTTATGAGCTTTATGTGTATCAAAAA 960 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 876 CAACTAATGAATGTAAAAATAGAAATATGT--ACCTTATGAGCTTTATGTGTATCAAAAA 933 Query 961 CACTGTGTAATGAAAGACAGATTTGTGAATTCCTGTAATTTGTCTTGGTGATCGAAT-GC 1019 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | || Sbjct 934 CACTGTGTAATGAAAGACAGATTTGTGAAAACCTGTATTTTGTCTTGGTGATCGATTTGC 993 Query 1020 TCGTGTGAGCTTGAATTCTAAGTGATGAA 1048 ||||||||||||||||||||||||||||| Sbjct 994 TCGTGTGAGCTTGAATTCTAAGTGATGAA 1022 > Ahg936994 jgi|Araly1|936994|scaffold_501185.1 Length=334 Score = 167 bits (90), Expect = 2e-40 Identities = 107/115 (93%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 935 CTTATGAGCTTTATGTGTATCAAAAACACTGTGTAATGAAAGACAGATTTGTGAATTCCT 994 |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| Sbjct 252 CTTATGAGCTTTATGTGTATCAAAAACAGTGTGTAATGAAAGTCAGATTTGTGAAAACCT 193 Query 995 GTAATTTGTCTTGGTGATCGA-ATGCTCGTGTGAGCTTGAATTCTAAGTGATGAA 1048 ||| |||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 192 GTATTTTGTCTTGGTGCTCGATTTGCTCGTGTGAGCTTGAATTCTAAGTGATGAA 138 Score = 145 bits (78), Expect = 8e-34 Identities = 82/84 (98%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 389 CCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATC 448 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 334 CCACTTGGACTTGGAGAAGTTCCAGAGAACCTTGAGAGATACAAAGAATCAGAGCTCATC 275 Query 449 CACTGTAGATGGGCTATGCTCGCT 472 |||||||||||||||||||||||| Sbjct 274 CACTGTAGATGGGCTATGCTCGCT 251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41325242028 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5